TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243004|gb|AFNH01001663.1| Gregarina niphandrodes asmbl.246...    28   3.9  
gi|338243048|gb|AFNH01001641.1| Gregarina niphandrodes asmbl.244...    27   8.8  

>gi|338243004|gb|AFNH01001663.1| Gregarina niphandrodes asmbl.2466,
           whole genome shotgun sequence
          Length = 20175

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 12  KPIKKAPIITEECYRNGYHPSKWEL 36
           K I+  P  TE+C  NG HP   EL
Sbjct: 513 KKIRSPPQTTEQCSHNGAHPKCCEL 439


>gi|338243048|gb|AFNH01001641.1| Gregarina niphandrodes asmbl.2446,
            whole genome shotgun sequence
          Length = 2036

 Score = 26.6 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 22   EECYRNGYHPSKWELAQVLLN 42
            ++C R+GYH   W+ A+ LL+
Sbjct: 1484 QDCLRDGYHIQGWQQARKLLS 1422


  Database: G.niphandrodes/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,868,867
Number of Sequences: 3680
Number of extensions: 67413
Number of successful extensions: 263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of query: 257
length of database: 5,120,956
effective HSP length: 93
effective length of query: 164
effective length of database: 4,778,716
effective search space: 783709424
effective search space used: 783709424
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)