TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_55                                                            32   1.4  

>scaffold_55
          Length = 359325

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 145    HPADEWYIGGDEISLCYRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKVYDAV 204
              HP  +WY+ G ++   YRQ + +  R +           C   F +D     F +V+D  
Sbjct: 312161 HPCQDWYLHGTQLDY-YRQHRRLAHRLD-----------CNYWF*LD--HRQFERVFDVF 312024

Query: 205    PERLYV 210
              P R Y+
Sbjct: 312023 PSRRYI 312006


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,621,506
Number of Sequences: 271
Number of extensions: 413850
Number of successful extensions: 1898
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 273
length of query: 257
length of database: 26,846,802
effective HSP length: 104
effective length of query: 153
effective length of database: 26,818,618
effective search space: 4103248554
effective search space used: 4103248554
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)