TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848016|gb|ADNL01002587.1| Astrammina rara contig03062, who...    26   0.68 
gi|330847435|gb|ADNL01003168.1| Astrammina rara contig02847, who...    24   3.4  
gi|330849896|gb|ADNL01000707.1| Astrammina rara contig00803, who...    23   7.5  

>gi|330848016|gb|ADNL01002587.1| Astrammina rara contig03062, whole
            genome shotgun sequence
          Length = 1906

 Score = 26.2 bits (56), Expect = 0.68
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 135  DIYIVYLKEIHPADEWYI 152
            ++ IVYL   HP+  WYI
Sbjct: 1270 NLIIVYLNTSHPSSNWYI 1217


>gi|330847435|gb|ADNL01003168.1| Astrammina rara contig02847, whole
           genome shotgun sequence
          Length = 568

 Score = 23.9 bits (50), Expect = 3.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 44  IWKPYKFKSYMQYKSRERLNL 64
           +W  Y F  Y +Y +R R+N+
Sbjct: 504 LWFYYSFLKYKKYSARGRINV 566


>gi|330849896|gb|ADNL01000707.1| Astrammina rara contig00803, whole
           genome shotgun sequence
          Length = 1249

 Score = 22.7 bits (47), Expect = 7.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 139 VYLKEIHPADEWYIGGDEISLC 160
           +Y  E+   D++Y+G   +S+C
Sbjct: 145 LYCSELE*TDQYYVGCGGVSVC 210


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,435
Number of Sequences: 3231
Number of extensions: 5916
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of query: 257
length of database: 483,365
effective HSP length: 72
effective length of query: 185
effective length of database: 250,733
effective search space: 46385605
effective search space used: 46385605
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)