TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|166240590|ref|XP_643546.2| thyroxine 5'-deiodinase
[Dictyostelium discoideum AX4]
         (257 letters)

Database: A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325182832|emb|FR824078.1| Albugo laibachii Nc14, genomic cont...    28   8.4  

>gi|325182832|emb|FR824078.1| Albugo laibachii Nc14, genomic contig
              CONTIG_33_NC14_v4_142048_225
          Length = 142048

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 124    QDIFVDFKEWVDIYIVYLKEIHPAD--EWYIGGDEISLC--YRQPKTMEDRREIIKDLKE 179
              +D F D+      + V L E   A+   WY G   +SL   YR+    + R+ II  L E
Sbjct: 104148 RDAFQDYWRDPAFHHVKLSEDRQAEAQSWY-GVLSVSLVSKYRRLGGFKIRKTIITHL*E 104324

Query: 180    YAPFCTI 186
              + PFCT+
Sbjct: 104325 FFPFCTL 104345


  Database: A.laibachii_Nc14/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,157,226
Number of Sequences: 3816
Number of extensions: 146190
Number of successful extensions: 600
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 360
length of query: 257
length of database: 10,913,379
effective HSP length: 98
effective length of query: 159
effective length of database: 10,539,411
effective search space: 1675766349
effective search space used: 1675766349
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)