TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr4                                                         27   7.1  
T.congo.pschr.5                                                        27   9.3  
T.congo.pschr.3.                                                       27   9.3  

>T.congo.pschr4
          Length = 1343510

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 108    RQKTSVHRFLKGNRPLVLSFGSCTUPP 134
              R++  + RFL   R ++LSF +C  PP
Sbjct: 368616 RKQQQLERFLVSRRAILLSFLACKVPP 368536


>T.congo.pschr.5
          Length = 1517473

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 69     PAFFSLAFIKTLFFVNWCSLGLEAFEGHAAPD-SALITLDRQKTSVH 114
              P FFS   +++   +NW SL    F  HAA   S+  T  RQ    H
Sbjct: 504211 PTFFSR*SVRSTALINWISLCRSYFFAHAARRLSSFSTCARQHEVEH 504071


>T.congo.pschr.3.
          Length = 1451265

 Score = 26.9 bits (58), Expect = 9.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 76     FIKTLFFVNWCSLGLEA 92
              FI +LFF +WC++G+ +
Sbjct: 599823 FITSLFFFHWCTMGIHS 599773


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,983,559
Number of Sequences: 11
Number of extensions: 80363
Number of successful extensions: 436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 100
length of query: 241
length of database: 7,429,315
effective HSP length: 95
effective length of query: 146
effective length of database: 7,428,270
effective search space: 1084527420
effective search space used: 1084527420
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)