TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                              29   2.7  
contig_34                                                              28   7.8  

>contig_36
          Length = 2713248

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -3

Query: 94      EGHAAPDSALITLDRQKTSVHRFLKGNRP-----LVLSFGSCTUPPFLYKLDEFKQLVKD 148
               E   +P    ++ +++KT   R   G R      LV S G C+ PP ++      QLV+ 
Sbjct: 1508851 ERKTSPPHERVSTEKRKTEQRRCSDGGRQGDRNQLVTSPGHCSSPPSVHLSQLTSQLVRQ 1508672

Query: 149     FSNVADFLIVYLAEA 163
                    D + ++L  A
Sbjct: 1508671 APLFCDSIRLFLRRA 1508627


>contig_34
          Length = 1750858

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 60      PKFRYEDWGPAFFSLAFIKTLFFVNWCSLGLEAFEGHAAPDS 101
               PK   +D G        ++++ FV WC +G+ A   H+A D+
Sbjct: 1333308 PKGAGDDAGVVLDPALRLRSISFVQWCPIGVHAGLIHSAGDA 1333183


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,639,825
Number of Sequences: 36
Number of extensions: 130064
Number of successful extensions: 679
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 119
length of query: 241
length of database: 10,814,999
effective HSP length: 97
effective length of query: 144
effective length of database: 10,811,507
effective search space: 1556857008
effective search space used: 1556857008
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)