TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: I.multifiliis_strain_G5/genome.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340500841|gb|GL984332.1| Ichthyophthirius multifiliis unplace...    30   2.3  
gi|340507271|gb|GL983480.1| Ichthyophthirius multifiliis unplace...    29   3.9  

>gi|340500841|gb|GL984332.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251371, whole genome shotgun
             sequence
          Length = 42813

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 199   PCPVVVDEMNNITASKYGALPERLYVIQS 227
             PCP+    ++NI+ +KY  +P+R+YV +S
Sbjct: 19799 PCPL----LSNISGAKYSGVPQRVYVRES 19725


>gi|340507271|gb|GL983480.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509250224, whole genome shotgun
             sequence
          Length = 113126

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 29    MSMLKLLSFISPGRMRKIHMKMGERSTMTQNPKFRYED-WGPAFFSLAFIKTLFFVN 84
             M  +K+L F  PGR+  +H+K        +  K  ++D W   FF   +    FFV+
Sbjct: 70826 MEDIKVLLFQQPGRLTLMHLKQIHIKLKNRQGKLLFKDFWKKFFFLF*YFFN*FFVD 70996


  Database: I.multifiliis_strain_G5/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,242,648
Number of Sequences: 2017
Number of extensions: 189891
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 154
length of query: 241
length of database: 16,266,656
effective HSP length: 100
effective length of query: 141
effective length of database: 16,064,956
effective search space: 2265158796
effective search space used: 2265158796
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)