TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromos...    63   2e-10
gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    29   3.6  
gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    28   4.8  
gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromoso...    28   4.8  

>gi|256541943|gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2,
               whole genome shotgun sequence
          Length = 8484197

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
 Frame = +3

Query: 120     NRPLVLSFGSCTUPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAFKNNVDISV 179
               +RP+VL  GS T PPF  K+  F+ +  DF    D  IVYL E H  D W +    +IS+
Sbjct: 5885022 DRPMVLICGSFT*PPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEW-YIGGDEISL 5885198

Query: 180     ----HKNXXXXXXXXXXXXKEDPPC--PVVVDEMNNITASKYGALPERLYVIQSGKVIY 232
                    K             +  P C  P ++D+M+N     Y A+PERLYV++  K  Y
Sbjct: 5885199 CYRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKFKY 5885375


>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4,
              whole genome shotgun sequence
          Length = 5450249

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 195    KEDPPCPVVVDEMNNITASKYGAL--PERLYVIQSGKVI 231
              K++PP P+VVD M ++  ++YG +  P    VI S + I
Sbjct: 113560 KKNPPQPIVVDHMVSVKPTQYGGVVYPSTHSVISSQQKI 113676


>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5,
              whole genome shotgun sequence
          Length = 5125352

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 120    NRPLVLSFGSCTUPPFLYKLDEFKQLVKDF 149
              N+ L +SF SC+ PP   +  E KQL   F
Sbjct: 338616 NKILDISFRSCSGPPITIEFGELKQLNSTF 338705


>gi|93569114|gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1,
              whole genome shotgun sequence
          Length = 4923596

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +3

Query: 139    LDEFKQLVKDFSNVADFLIV----YLAEAHATDAWAFKNNVD 176
              ++  +Q +K+F+NVA+ L      YL E H  D    KN+++
Sbjct: 752472 IESVEQSIKEFNNVANELETEFRDYLVETHKNDVNNIKNDIE 752597


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,473,505
Number of Sequences: 6
Number of extensions: 116298
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 122
length of query: 241
length of database: 11,314,357
effective HSP length: 98
effective length of query: 143
effective length of database: 11,313,769
effective search space: 1617868967
effective search space used: 1617868967
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)