TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29165348|gb|AAO65268.1| iodothyronine deiodinase type I
Deio1 [Danio rerio]
         (241 letters)

Database: A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848866|gb|ADNL01001737.1| Astrammina rara contig02062, who...    26   0.62 
gi|330848213|gb|ADNL01002390.1| Astrammina rara contig02850, who...    24   3.1  
gi|330847815|gb|ADNL01002788.1| Astrammina rara contig03279, who...    23   4.0  
gi|330847944|gb|ADNL01002659.1| Astrammina rara contig03142, who...    23   6.8  
gi|330849959|gb|ADNL01000644.1| Astrammina rara contig00724, who...    23   6.8  
gi|330848434|gb|ADNL01002169.1| Astrammina rara contig02594, who...    22   8.9  

>gi|330848866|gb|ADNL01001737.1| Astrammina rara contig02062, whole
           genome shotgun sequence
          Length = 239

 Score = 26.2 bits (56), Expect = 0.62
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 40  PGRMRKIHMKMGERSTMTQNPKFRYEDWGPAFFSLAFIKTL 80
           PGR   IH+    R T+    +FRY     + +S+AF+ TL
Sbjct: 145 PGRSSPIHIDYNTRQTLAHLIEFRY--MLASLWSVAFLWTL 29


>gi|330848213|gb|ADNL01002390.1| Astrammina rara contig02850, whole
           genome shotgun sequence
          Length = 865

 Score = 23.9 bits (50), Expect = 3.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 11  KLFVYISAVLMVCAAILQMSMLKLLSFISPGRMRKIHM 48
           K+F+  S VL+ CA     +   L+S     R+ K+H+
Sbjct: 326 KMFIARSFVLLACATTAVPTFTILVSNTPAYRLTKLHL 213


>gi|330847815|gb|ADNL01002788.1| Astrammina rara contig03279, whole
           genome shotgun sequence
          Length = 523

 Score = 23.5 bits (49), Expect = 4.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 86  CSLGLEAFEGHAAPDSALITLDRQKTS 112
           C LG+    GH A D   I LDR +TS
Sbjct: 152 CFLGV----GHRATDFPKIVLDRSQTS 220


>gi|330847944|gb|ADNL01002659.1| Astrammina rara contig03142, whole
           genome shotgun sequence
          Length = 858

 Score = 22.7 bits (47), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 23  CAAILQMSMLKLLSFISPGRMRK 45
           CAA+L++S +  + FIS   + K
Sbjct: 496 CAAVLRVSKISAIEFISATALLK 428


>gi|330849959|gb|ADNL01000644.1| Astrammina rara contig00724, whole
           genome shotgun sequence
          Length = 812

 Score = 22.7 bits (47), Expect = 6.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 196 EDPPCPVVVDEMNNITASKYGALPERLYVIQSGKVIYQASDLGGQ 240
           + PPCP+ V E+        G    RLY++ +     + +D  G+
Sbjct: 272 QQPPCPL*VSEL--------GEYMSRLYLVLTDNRASRVADTQGK 382


>gi|330848434|gb|ADNL01002169.1| Astrammina rara contig02594, whole
            genome shotgun sequence
          Length = 2535

 Score = 22.3 bits (46), Expect = 8.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 110  KTSVHRFLKGNRPLVLSFGSCTUPPFLYKLDEFKQLV 146
            +T+VH    GN   ++   S +  PFL+K +     V
Sbjct: 1179 RTTVHTVRTGNNATLMLSVSNSFKPFLHKSNNVSMYV 1289


  Database: A.rara/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,661
Number of Sequences: 3231
Number of extensions: 3978
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of query: 241
length of database: 483,365
effective HSP length: 72
effective length of query: 169
effective length of database: 250,733
effective search space: 42373877
effective search space used: 42373877
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)