TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       28   6.8  

>T.congo.pschr.11 
          Length = 4797796

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 175     AHPSDGWVTTDSPYIIPQHRSLEDRVSAAR 204
               AHP  G+V T SPY +P H +L    S  R
Sbjct: 3242494 AHP--GFVITTSPYYLPHHHALLKYSSTGR 3242411



 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 69      PDDPPICVSDDNRLC 83
               PDDPPI V+ + RLC
Sbjct: 1730255 PDDPPIVVNTNKRLC 1730299


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,000,597
Number of Sequences: 11
Number of extensions: 165644
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 175
length of query: 278
length of database: 7,429,315
effective HSP length: 96
effective length of query: 182
effective length of database: 7,428,259
effective search space: 1351943138
effective search space used: 1351943138
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)