TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_3                                                        30   2.9  
PHYCAscaffold_104                                                      29   6.4  
PHYCAscaffold_57                                                       29   6.4  

>PHYCAscaffold_3 
          Length = 1611504

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -2

Query: 107     GPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAFQRLVTKYQRDVD 166
               GPAP+  +  PD F     +D      P+  N+ SC    F   M+     V  Y R +D
Sbjct: 1521683 GPAPHCRLGSPDYFPPSTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLD 1521504


>PHYCAscaffold_104 
          Length = 135144

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +3

Query: 49    RRRGQPEPEV---ELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDF 99
             R  G+P PE+   E+     ++PPD PP   +D +  C     K ++  + + F
Sbjct: 17919 RPEGEPFPELHVEEIKDPEPDIPPDKPPNVSADFSDSCLTEEQKELF*AELISF 18080


>PHYCAscaffold_57 
          Length = 397303

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +3

Query: 181    WVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAY 228
              W T+ S  I     SL    SA R L+  A  CAL++  MAN S  A+
Sbjct: 122457 WKTS*SLTICGCCISLRIFTSATRALRSSADNCALLMHLMANFSPVAF 122600



 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 49    RRRGQPEPEV---ELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDF 99
             R  G+P PE+   E+     ++PPD PP   +D +  C     K ++  +   F
Sbjct: 23273 RPEGEPFPELHVEEIKGPEPDIPPDKPPNVSADFSDSCLTEEQKELFQAELNSF 23434


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,462,514
Number of Sequences: 917
Number of extensions: 455656
Number of successful extensions: 1947
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 789
length of query: 278
length of database: 21,341,249
effective HSP length: 104
effective length of query: 174
effective length of database: 21,245,881
effective search space: 3696783294
effective search space used: 3696783294
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)