TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6953 |  | 1 to 5631                                           34   0.12 
Lt_contig4817 |  | 1 to 6196                                           29   3.1  
Lt_contig3375 |  | 1 to 2348                                           29   3.1  
Lt_contig7013 |  | 1 to 12919                                          28   5.2  
Lt_contig3645 |  | 1 to 5132                                           28   5.2  
Lt_contig6395 |  | 1 to 13447                                          28   5.2  
Lt_contig6192 |  | 1 to 3549                                           28   5.2  
Lt_contig7058 |  | 1 to 9347                                           28   8.9  

>Lt_contig6953 |  | 1 to 5631
          Length = 5631

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
 Frame = +1

Query: 46   LGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHE 105
            LGRR   QP P+  L       PP  PP       R+  +     +W G K +F  + H 
Sbjct: 4576 LGRRGYRQPSPQTLLRVSAHGSPPTPPPPRPRTQRRIQQIHCATRIWCGTK-NFGLRTHG 4752

Query: 106  GGP-------APNS 112
            G P       APNS
Sbjct: 4753 GVPTRSCTREAPNS 4794


>Lt_contig4817 |  | 1 to 6196
          Length = 6196

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 28   GTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNR 81
            G+  + +L  F C R +  GRR R     +   +      PP  PP+ +++D R
Sbjct: 3525 GSVHLPFLFAFTC-RIYACGRRSRSMSPVDASTDDPPPSSPPLSPPLMIANDER 3367


>Lt_contig3375 |  | 1 to 2348
          Length = 2348

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 176  HPSDGWVTTDSPYIIPQHRS 195
            HPS G    + PYI+PQH S
Sbjct: 1204 HPSAGAAAPEGPYIVPQHLS 1145


>Lt_contig7013 |  | 1 to 12919
          Length = 12919

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +2

Query: 248  GRGPDGYQVSELRTWLERYDEQLHGARPR 276
            G  PD  Q   LR WL R    L GARPR
Sbjct: 7430 GPKPDP*QPHRLRRWLGRAGRILRGARPR 7516


>Lt_contig3645 |  | 1 to 5132
          Length = 5132

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 40   CIRKHFLGRRRRGQP 54
            C R HFLGRRRR +P
Sbjct: 2595 CPRHHFLGRRRRDEP 2551


>Lt_contig6395 |  | 1 to 13447
          Length = 13447

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 192  QHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSA 227
            Q+RS+ +  +    +++G+ GCALVL     S+++A
Sbjct: 8139 QYRSVREVANLDATVEEGSSGCALVLTNGGGSAATA 8246


>Lt_contig6192 |  | 1 to 3549
          Length = 3549

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
 Frame = +3

Query: 56  PEVELNSEGEEVPPDDPPICVSDDNRLCTLASL--KAVWHGQKLDFFKQAHEGGPAP 110
           P   L       PP  PP   + D  LC   S+  +A W G + D  +Q  EG  AP
Sbjct: 459 PSRRLREHDRGSPPPPPPPPPNRDRSLCARTSMPARASWSG-RADAGRQVCEGWEAP 626


>Lt_contig7058 |  | 1 to 9347
          Length = 9347

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 135  LVLNFGSCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPY 188
            L L+F  C  P    R+S     VT        L ++  E H S+G + TDSPY
Sbjct: 8204 LTLSFCDCDDPAPHPRVSGTLVPVT--------LCLHTIEKHCSNGLIPTDSPY 8341


  Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa
    Posted date:  Sep 30, 2011 12:11 AM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,436,255
Number of Sequences: 7267
Number of extensions: 352641
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of query: 278
length of database: 10,532,946
effective HSP length: 98
effective length of query: 180
effective length of database: 9,820,780
effective search space: 1767740400
effective search space used: 1767740400
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)