TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Homo sapiens # Complete (278 letters) Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 36 sequences; 32,444,998 total letters Searching....................................done Score E Sequences producing significant alignments: (bits) Value contig_21 32 0.67 contig_33 31 1.1 contig_27 31 1.1 contig_11 29 3.3 contig_25 28 5.7 contig_35 28 7.4 contig_34 28 7.4 contig_32 28 7.4 contig_24 28 7.4 contig_18 28 9.7 >contig_21 Length = 767234 Score = 31.6 bits (70), Expect = 0.67 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -1 Query: 141 SCTUPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQHRSLEDRV 200 +C PP + + AF+R D + + + HP D VT + QHR L +V Sbjct: 131261 ACIVPPKVRQQFAFRRGAEDADDRADAVRVRVARVHPDDEHVT------VAQHRQLPAQV 131100 Query: 201 SAA 203 AA Sbjct: 131099 DAA 131091 >contig_33 Length = 1453978 Score = 30.8 bits (68), Expect = 1.1 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +1 Query: 22 LFPRFLGTAFMLWLLDFLCIRKHFL-----GRRRRGQPEPEVE 59 ++PR G+A ++WLL FL +R FL R RR P P ++ Sbjct: 1112983 VYPRT*GSA*IVWLLAFLFLRPFFLTRLVHARTRRPVPMPSLQ 1113111 Score = 30.8 bits (68), Expect = 1.1 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%) Frame = -2 Query: 150 RMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW----VTTDSPYIIPQHRSLEDRVSAARV 205 R+S F RL ++ F + + A P G V+T P +P R E+ +A+ Sbjct: 183963 RVSPFVRLCHLHRLPSPFFL-QLSRAVPGVGR*PCAVSTLLPSRLPMKRFREEADAASE- 183790 Query: 206 LQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQS 240 + GA + V + +SSSS Y YFE ++ I S Sbjct: 183789 -RAGAHDASDVTSAVRSSSSSPYALYFEVIFGITS 183688 >contig_27 Length = 1024085 Score = 30.8 bits (68), Expect = 1.1 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = -1 Query: 146 PFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQH 193 PF+AR+S+ L++ D+ L ++ P DGW +P + H Sbjct: 818603 PFVARLSSSPPLLSCNFADLHMLCLFPSLPRPDDGWAGGHTPPCVASH 818460 Score = 27.7 bits (60), Expect = 9.7 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +2 Query: 58 VELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAH 104 VE S +VPP PP+ VS R LA + V H + AH Sbjct: 731381 VESGSPLLQVPPRQPPLQVSRSRRCRELADVMVVAHVHACTRARHAH 731521 >contig_11 Length = 580223 Score = 29.3 bits (64), Expect = 3.3 Identities = 54/221 (24%), Positives = 85/221 (38%), Gaps = 24/221 (10%) Frame = -1 Query: 42 RKHFLGRRR-----RGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWHGQK 96 R+H G RR +G + +V+L E + PP CV +R C L+SL + Sbjct: 361334 RRHEYGERRGTSRRQGHGDRQVDLLREPQREDAFPPP-CVCPSHRTCLLSSLFVFFLACC 361158 Query: 97 L--DFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNFGSCTUPPFMARMSAF 154 L FF QA+ S+ V +L +G R L + + R+SA Sbjct: 361157 LLFRFFLQANRS--QRGSD*VSGGRGGGLLLLGRTEGGRARSLLGQALLLVTLLVRLSAL 360984 Query: 155 QRLVTKYQRD----VDFLIIYIEEAHPSDGWVTTDSPYII-----------PQ--HRSLE 197 + LV D V L++ + P D + +++ PQ L Sbjct: 360983 RLLVLALLLDGHQVVTRLVLDLNVLDPVDVVLKRRGSFLLLLKAGLLHAPRPQVLLTPLL 360804 Query: 198 DRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238 D + A LQ+ A A+VLD + +GA +L + Sbjct: 360803 DLLDALHHLQRVAQQFAVVLDRNVAALLKVHGAIHRQLLAV 360681 >contig_25 Length = 897883 Score = 28.5 bits (62), Expect = 5.7 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +1 Query: 42 RKHFLGRRRRGQPEPEVELNSEGEEVPPDDPP 73 R+ FLGRRRR QP S PD PP Sbjct: 614284 RRRFLGRRRRPQPRAARRCPSCATLPRPDRPP 614379 >contig_35 Length = 2113966 Score = 28.1 bits (61), Expect = 7.4 Identities = 14/33 (42%), Positives = 14/33 (42%) Frame = +3 Query: 245 YQGGRGPDGYQVSELRTWLERYDEQLHGARPRR 277 Y G D Q LR WL HG RPRR Sbjct: 423864 YLAQHGHDSVQ*QLLRRWLRLVRSVAHGTRPRR 423962 >contig_34 Length = 1750858 Score = 28.1 bits (61), Expect = 7.4 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Frame = +1 Query: 67 VPPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHE--GGPAPNSEVVLPDGFQSQH 124 VPP C S C S A H K D+ QAHE P +V GF++ Sbjct: 466960 VPPISRSFCPSLSMHACPRKSSDARLHRGKGDYEGQAHEVDRRVGPTRKVSSFVGFKA-- 467133 Query: 125 ILDYAQGNRPLVLNFGSC 142 +L + +G P + G C Sbjct: 467134 VLSHRKGLLPHLKGIGCC 467187 >contig_32 Length = 1559911 Score = 28.1 bits (61), Expect = 7.4 Identities = 20/54 (37%), Positives = 21/54 (38%) Frame = +1 Query: 24 PRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPICVS 77 P FL L L DF C R F R R P P + PP PP C S Sbjct: 310861 PPFLCECLSLCLCDFFCSRSRFSCRHRCPLPSPNL-----AATYPP--PPRCRS 311001 >contig_24 Length = 877124 Score = 28.1 bits (61), Expect = 7.4 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +2 Query: 31 FMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPI 74 F L L + +R +GRRRRG+ ++ + +EVPP P + Sbjct: 624221 FCLRCLKMVLMRAFGMGRRRRGRGREDLIIA*SLKEVPPPLPAV 624352 >contig_18 Length = 735640 Score = 27.7 bits (60), Expect = 9.7 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 5/81 (6%) Frame = +3 Query: 15 QTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDPPI 74 Q SC++ FP F FLG ++ P P VPP DPP Sbjct: 655404 QGHSCIIFFPFF------------------FLGVQQPP*PLPH--------RVPPRDPPP 655505 Query: 75 CVSDDNRL-----CTLASLKA 90 C+S +RL C++ S A Sbjct: 655506 CLSGRSRLVCSRWCSMKSTTA 655568 Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa Posted date: Oct 4, 2011 6:44 PM Number of letters in database: 32,444,998 Number of sequences in database: 36 Lambda K H 0.322 0.139 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 16,322,765 Number of Sequences: 36 Number of extensions: 394335 Number of successful extensions: 1712 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 1563 Number of HSP's gapped (non-prelim): 316 length of query: 278 length of database: 10,814,999 effective HSP length: 99 effective length of query: 179 effective length of database: 10,811,435 effective search space: 1935246865 effective search space used: 1935246865 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)