TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFNH01002346.1| Gregarina niphandrodes asmbl.3091, whole geno...    29   2.0  
gb|AFNH01001748.1| Gregarina niphandrodes asmbl.2545, whole geno...    27   5.8  
gb|AFNH01002320.1| Gregarina niphandrodes asmbl.3067, whole geno...    27   9.9  

>gb|AFNH01002346.1| Gregarina niphandrodes asmbl.3091, whole genome shotgun sequence
          Length = 13675

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 181  WVTTDSPYIIPQHRSLEDRVSAARVLQQGAP 211
            W+TTD P  IP HR ++ +++   V    AP
Sbjct: 8607 WITTD*PNRIPTHRPVDTQINLLGVCLGSAP 8515


>gb|AFNH01001748.1| Gregarina niphandrodes asmbl.2545, whole genome shotgun sequence
          Length = 24226

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 48    RRRRGQPEPEVELNSEGEEVPPDDPPICVSDDNRLCTLASLKAVWH 93
             +R RG+P          ++ PP  PP+ +S+ NR   L   K +W+
Sbjct: 15773 KRPRGRPR---------KDQPPPPPPLDMSEVNRQKRLVVAKQIWN 15883


>gb|AFNH01002320.1| Gregarina niphandrodes asmbl.3067, whole genome shotgun sequence
          Length = 7527

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +2

Query: 184  TDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYG 229
            T  P+  PQH SL D  +  RVL    P    V       +  A+G
Sbjct: 4904 TRLPFRTPQHESLPDNTTGRRVLLSWMPSGRTVGGDPKAGNKDAFG 5041


  Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa
    Posted date:  Sep 29, 2011 11:25 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,871,866
Number of Sequences: 3680
Number of extensions: 139018
Number of successful extensions: 591
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of query: 278
length of database: 5,120,956
effective HSP length: 93
effective length of query: 185
effective length of database: 4,778,716
effective search space: 884062460
effective search space used: 884062460
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)