TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_4                                                             31   2.1  
scaffold_88                                                            30   6.1  
scaffold_6                                                             30   6.1  

>scaffold_4 
          Length = 3206981

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +2

Query: 223     SSSSAYGAYFERLYVIQSGTIMYQGGRGP----DGYQVSELRT 261
               S+S  YG+Y +R Y   SGT+   GG+ P     GYQ    RT
Sbjct: 1262015 SNSGLYGSYLDR*YPNGSGTMSTYGGK*PRRTDSGYQYIRRRT 1262143


>scaffold_88 
          Length = 172549

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 13     CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVE 59
              CA + SC VLF  +  T   L L  F    + F+G    G P+ E+E
Sbjct: 118083 CALSISCAVLFGTYFSTLLSLTLKSFSSFVRIFIG----GLPQQELE 117955


>scaffold_6 
          Length = 2967614

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 189    IIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVI 238
              ++P   S+ +    A+ L+ G P CA  +     S+S AYG+    L+V+
Sbjct: 627997 LLPGSDSVSETEKGAKKLELGEPNCARSVIDSIGSASIAYGSLKRDLHVL 628146


  Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa
    Posted date:  Sep 29, 2011 10:40 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,711,034
Number of Sequences: 271
Number of extensions: 443756
Number of successful extensions: 1644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 447
length of query: 278
length of database: 26,846,802
effective HSP length: 105
effective length of query: 173
effective length of database: 26,818,347
effective search space: 4639574031
effective search space used: 4639574031
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)