TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaff...    32   0.38 
gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaff...    32   0.64 

>gb|GL883006.1| Dictyostelium fasciculatum unplaced genomic scaffold
               Scf_Dfasci-G-b-205a01.r1-3, whole genome shotgun sequence
          Length = 2485436

 Score = 32.3 bits (72), Expect = 0.38
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -2

Query: 173     EEAHPSDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYF 232
               E+AHP+  W+T  +P + P  + L + +S A ++       A +L+    +S    G Y 
Sbjct: 1396324 EQAHPAPSWLTNMTPVVNPNAQLLTNEISLAELV-------AAILNLKNGTSPGPDGVYN 1396166

Query: 233     ERLYVIQSGTIMY 245
               E +       I Y
Sbjct: 1396165 EFIKNCPPSVIAY 1396127


>gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaffold
              Scf_EU5ZYIE01EUG8B-5, whole genome shotgun sequence
          Length = 941765

 Score = 31.6 bits (70), Expect = 0.64
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 147    FMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW 181
              F   +  F+ +  +Y+  V   I+Y++E HPSD W
Sbjct: 155390 FFV*LFRFESIYQEYKDKVQCYIVYLKEMHPSDEW 155494


  Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa
    Posted date:  Sep 29, 2011 10:07 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,143,098
Number of Sequences: 25
Number of extensions: 153413
Number of successful extensions: 532
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 49
length of query: 278
length of database: 10,339,736
effective HSP length: 99
effective length of query: 179
effective length of database: 10,337,261
effective search space: 1850369719
effective search space used: 1850369719
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)