TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig654 |  | 1 to 18096                                           29   4.9  
Cf_Contig1055 |  | 1 to 461976                                         28   8.4  
Cf_Contig746 |  | 1 to 82756                                           28   8.4  

>Cf_Contig654 |  | 1 to 18096
          Length = 18096

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 204  RVLQQGAPGCALVLDTMANSSSSAYGAYFER 234
            R+L+ G P C LVL T A S+S   G  F R
Sbjct: 4230 RLLRSGWPACTLVLRTRAASASMYVGEGFTR 4138


>Cf_Contig1055 |  | 1 to 461976
          Length = 461976

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 85    LASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHI 125
             +ASL  V HG+  D    AH   P P + V LP+  +  H+
Sbjct: 10225 VASLALVLHGRGTDL---AHNAKPLPTAAVRLPEKVEGLHL 10338


>Cf_Contig746 |  | 1 to 82756
          Length = 82756

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 98    DFFKQAHEGGPAPNSEVVLPDGFQ-SQHILDYAQGNRPLVL 137
             +FFK  HE G  P+  V+L      S  + D++ GN PL L
Sbjct: 75679 NFFKAPHESGMVPSRAVLLRRSMNFSAFMSDHSGGNVPLRL 75801


  Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,039,048
Number of Sequences: 1089
Number of extensions: 382652
Number of successful extensions: 1616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1300
Number of HSP's gapped (non-prelim): 727
length of query: 278
length of database: 12,349,441
effective HSP length: 100
effective length of query: 178
effective length of database: 12,240,541
effective search space: 2178816298
effective search space used: 2178816298
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)