TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000003_1.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Homo sapiens # Complete
         (278 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824046.1| Albugo laibachii Nc14, genomic contig CONTIG_1_N...    33   0.17 
emb|FR824316.1| Albugo laibachii Nc14, genomic contig CONTIG_271...    30   1.9  
emb|FR824049.1| Albugo laibachii Nc14, genomic contig CONTIG_4_N...    30   2.5  
emb|FR824055.1| Albugo laibachii Nc14, genomic contig CONTIG_10_...    29   4.3  
emb|FR824053.1| Albugo laibachii Nc14, genomic contig CONTIG_8_N...    28   9.5  
emb|FR824228.1| Albugo laibachii Nc14, genomic contig CONTIG_183...    28   9.5  

>emb|FR824046.1| Albugo laibachii Nc14, genomic contig CONTIG_1_NC14_v4_580768_240
          Length = 580768

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 210    APGCALVLDTMANSSSSAYGAYF-----ERLYVIQSGTIMYQGGRGPDGYQVS 257
              +PGC++V      +  S   A+      ER +   S +I + GGR  DGY+VS
Sbjct: 404596 SPGCSIVQKRSRTTRESPINAFHRYGADERCHTRVSSSICFHGGRNCDGYKVS 404754


>emb|FR824316.1| Albugo laibachii Nc14, genomic contig CONTIG_271_NC14_v4_35108_217
          Length = 35108

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +3

Query: 180   GWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQ 239
             GW    S +  P H  L+D  ++ R+ QQ            A S S  +G  F R ++ Q
Sbjct: 17928 GWSLNKSQFYCPSHEELDDNATSTRLSQQ------------AESVSKRFGLQFHREWLQQ 18071


>emb|FR824049.1| Albugo laibachii Nc14, genomic contig CONTIG_4_NC14_v4_277804_239
          Length = 277804

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 55     EPEVELNSEGEEVPPDDPPICVSDDN 80
              EPE+E  SE ++VP DDP    S +N
Sbjct: 223352 EPELEYKSESDDVPLDDPDSVESFEN 223429


>emb|FR824055.1| Albugo laibachii Nc14, genomic contig CONTIG_10_NC14_v4_229526_245
          Length = 229526

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = -3

Query: 81    RLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGNRPLVLNF- 139
             RLC+L    +     KLD  ++ H      ++EVV+   F +++  ++ +    L ++  
Sbjct: 54924 RLCSLLGDTSTSMATKLDTIERIHSSSNQLDAEVVIESQFDAKYPFEFGRAYLQLAMDLC 54745

Query: 140   -GSCTUPPFMARMSAFQRLV 158
              G C     + R  AFQ ++
Sbjct: 54744 PGRCRD---IVRKLAFQLII 54694


>emb|FR824053.1| Albugo laibachii Nc14, genomic contig CONTIG_8_NC14_v4_238846_215
          Length = 238846

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -2

Query: 64    GEEVPPDDPPICVSDDNRLCTLA-----SLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPD 118
             G +VP   PP+CV++ +R+  ++          W G KL   +         +S+  +P+
Sbjct: 50097 GSQVPCKRPPLCVAESSRIHHMSPT*FYQAHLCWRGWKLVCVE---------HSDRYMPE 49945

Query: 119   GFQSQHILDY 128
               QS H  ++
Sbjct: 49944 ACQSSHFRNH 49915


>emb|FR824228.1| Albugo laibachii Nc14, genomic contig CONTIG_183_NC14_v4_52037_124
          Length = 52037

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 64    GEEVPPDDPPICVSDDNRLCTLA-----SLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPD 118
             G +VP   PP+CV++ +R+  ++          W G KL   +         +S+  +P+
Sbjct: 18767 GSQVPCKRPPLCVAESSRIHHMSPT*FYQAHLCWRGWKLVCVE---------HSDRYMPE 18919

Query: 119   GFQSQHILDY 128
               QS H  ++
Sbjct: 18920 ACQSSHFRNH 18949


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,563,015
Number of Sequences: 3816
Number of extensions: 182869
Number of successful extensions: 672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 423
length of query: 278
length of database: 10,913,379
effective HSP length: 99
effective length of query: 179
effective length of database: 10,535,595
effective search space: 1885871505
effective search space used: 1885871505
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)