TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                    33   0.15 
T.congo.pschr.8                                                        31   0.57 

>TcIL3000_10_v2.embl 
          Length = 3612457

 Score = 33.1 bits (74), Expect = 0.15
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +1

Query: 9       LITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFL 68
               L+ L     F S     ++Y S +L + +   LS  +   G W+  + ++GL C W   L
Sbjct: 2474746 LVFLSFFLPFLSY*CICSMYSSTVLFRFLFSSLSAKERVDGAWQWRVPAQGLACCWIGLL 2474925


>T.congo.pschr.8 
          Length = 2451971

 Score = 31.2 bits (69), Expect = 0.57
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
 Frame = +2

Query: 68      LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLL------------ 115
               L +A+ +V  GE+A  +    V+        G  + + +   AT  LL            
Sbjct: 1490516 LAEAFTEVLPGEEAARTVNAAVAEVGSDVIRGEESLQVVTNSATAQLLLEEAKQVYATFV 1490695

Query: 116     -----DFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVA 154
                    D + PE      F + T P F+  LP    L+EEF  VA
Sbjct: 1490696 RKRLLDASCPEPDDATQFHALTEPSFSLLLPHLIDLLEEFVMVA 1490827


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,884,956
Number of Sequences: 11
Number of extensions: 125304
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 245
length of query: 265
length of database: 7,429,315
effective HSP length: 96
effective length of query: 169
effective length of database: 7,428,259
effective search space: 1255375771
effective search space used: 1255375771
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)