TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa 297,657 sequences; 319,018,052 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Contig5077 12231 40311 44 0.001 Contig7521 5445 6810 34 0.61 Contig48363 488 488 34 0.79 Contig115020 561 561 33 1.8 Contig72861 620 620 32 3.9 Contig41397 1419 1419 32 3.9 Contig1927 17351 17421 32 3.9 Contig4897 8234 12998 31 6.7 Contig30997 1136 1136 30 8.8 Contig10101 3328 4128 30 8.8 Contig1245 20933 43064 30 8.8 >Contig5077 12231 40311 Length = 40311 Score = 43.5 bits (101), Expect = 0.001 Identities = 20/50 (40%), Positives = 29/50 (58%) Frame = +2 Query: 121 ERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGW 170 ++PLV+ GS + PP +P L +EFS F+ +YI EAH +D W Sbjct: 4532 DKPLVIIGGSYS*PPMRFVVPQLHALQKEFSEKMSFVCIYIAEAHATDEW 4681 >Contig7521 5445 6810 Length = 6810 Score = 34.3 bits (77), Expect = 0.61 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = -2 Query: 148 EEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDR 191 + F+S DFL VYI EAH SD W L +V K++N+ ++ Sbjct: 419 KSFASEVDFLGVYISEAHASDEW------PLGIKVFKNKNKNNK 306 >Contig48363 488 488 Length = 488 Score = 33.9 bits (76), Expect = 0.79 Identities = 25/69 (36%), Positives = 29/69 (42%) Frame = -3 Query: 115 LDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPG 174 L F S V N FT+ FR + E F FL VYI EAH D W I Sbjct: 237 LIFFSQYPKCVKNLKCCNSRIFTNSKVLFR-MYEAFQEKVKFLTVYILEAHTQDEWPIGD 61 Query: 175 DSSLSFEVK 183 D L+ + K Sbjct: 60 DVLLATQPK 34 >Contig115020 561 561 Length = 561 Score = 32.7 bits (73), Expect = 1.8 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -2 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 290 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRLLLV 153 Score = 32.3 bits (72), Expect = 2.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQL 140 L+ F+SP RPL+V F S + PPF L Sbjct: 213 LVPFSSPSRPLLVPFSSPSRPPFLPSL 133 Score = 31.6 bits (70), Expect = 3.9 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 7/56 (12%) Frame = -3 Query: 114 LLDFASPERPLVVNFGSATUP---PFTSQLPAFRKLVEEFSSVADF----LLVYID 162 L+ F+SP RPL+V F S + P PF+S P+ LV S ++ F L+V++D Sbjct: 268 LVPFSSPSRPLLVPFSSPSRPLLVPFSS--PSRPLLVSFSSPISPFP*PSLIVFLD 107 Score = 31.2 bits (69), Expect = 5.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -1 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 345 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 208 Score = 31.2 bits (69), Expect = 5.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -3 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 334 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 197 Score = 31.2 bits (69), Expect = 5.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -2 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 323 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 186 Score = 31.2 bits (69), Expect = 5.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -1 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 312 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 175 Score = 31.2 bits (69), Expect = 5.1 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -3 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L+ F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 301 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 164 Score = 30.8 bits (68), Expect = 6.7 Identities = 19/46 (41%), Positives = 24/46 (52%) Frame = -2 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV 159 L F+SP RPL+V F S + P R L+ FSS + LLV Sbjct: 356 LFPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLV 219 >Contig72861 620 620 Length = 620 Score = 31.6 bits (70), Expect = 3.9 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 15/74 (20%) Frame = -2 Query: 128 FGSATUPPFTSQLPAFRKLVEEFSSVADF-------LLVYIDEAHPSDGWAIPGDS---- 176 F ++ PPF +PAF L+EE + ++ LL+YI P +++P Sbjct: 514 FLPSSLPPFLPSVPAFEGLIEEIKEIPEYAR*CFIILLMYIYSLPPPPFFSLPSSPPPLA 335 Query: 177 ----SLSFEVKKHQ 186 +LSF + ++Q Sbjct: 334 PHILTLSFFIYRNQ 293 >Contig41397 1419 1419 Length = 1419 Score = 31.6 bits (70), Expect = 3.9 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 10 ITLQILPVFFSNCLFLALYDSVILLKHVVLLLS 42 + L LP F+S+C FL L+DS I V + LS Sbjct: 1031 LPLPFLPFFYSHCTFLTLHDSYIYTGDVSMSLS 1129 >Contig1927 17351 17421 Length = 17421 Score = 31.6 bits (70), Expect = 3.9 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Frame = +3 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLV-YIDEAHPSDGWAI 172 L+ F+SP RPL+V F S + P R L+ FSS + LLV + + P + Sbjct: 8634 LVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPFSSLLV 8813 Query: 173 P 173 P Sbjct: 8814 P 8816 Score = 31.2 bits (69), Expect = 5.1 Identities = 24/65 (36%), Positives = 31/65 (47%) Frame = +2 Query: 114 LLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIP 173 L F+SP RPL+V F S + P R L+ FSS + LLV + PS +P Sbjct: 8612 LFPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPFSSPSRPLLVPF--SSPSRPLLVP 8785 Query: 174 GDSSL 178 S L Sbjct: 8786 FSSLL 8800 >Contig4897 8234 12998 Length = 12998 Score = 30.8 bits (68), Expect = 6.7 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -1 Query: 17 VFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRR----MLTSEGLRCVWKSFLLDAY 72 +FFS F + ++LK +L S+++ST WR L+S C W SFL + Sbjct: 4886 LFFSFFFFFFFFLFFLILKKATILWSQAQSTNTAWRSPSPLCLSSS---CSWYSFLASMF 4716 Query: 73 K 73 + Sbjct: 4715 R 4713 >Contig30997 1136 1136 Length = 1136 Score = 30.4 bits (67), Expect = 8.8 Identities = 17/42 (40%), Positives = 26/42 (61%) Frame = -1 Query: 5 SVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKS 46 S+ L +L +L +F S+ LFL L S+I L +++ LLS S Sbjct: 761 SLSSLSSLSLLSLFISSSLFLLLLSSLISLCYILSLLSSLSS 636 >Contig10101 3328 4128 Length = 4128 Score = 30.4 bits (67), Expect = 8.8 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +3 Query: 10 ITLQILPVFFSNCLFLALYDSVI---LLKHVVLLLSRSKSTR 48 I L + + FS C+FLALY +++ LL+++ LL R K + Sbjct: 891 IVLALSTIKFSMCMFLALYSNILN*KLLQYLELLSLREKKRK 1016 >Contig1245 20933 43064 Length = 43064 Score = 30.4 bits (67), Expect = 8.8 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = -1 Query: 16 PVFFSNCLFLALYDSVILLKHVVL 39 P+F+S C +L ++ S + LKH++L Sbjct: 15137 PIFYSICCYLFVFPSFLCLKHIIL 15066 Database: /users/rg/didac/GENOMES/P.polycephalum/genome.fa Posted date: Sep 30, 2011 12:44 AM Number of letters in database: 319,018,052 Number of sequences in database: 297,657 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 111,252,673 Number of Sequences: 297657 Number of extensions: 1594647 Number of successful extensions: 7937 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 7561 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7927 length of query: 265 length of database: 106,339,350 effective HSP length: 111 effective length of query: 154 effective length of database: 73,299,423 effective search space: 11288111142 effective search space used: 11288111142 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 67 (30.4 bits)