TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_65                                                       31   2.0  
PHYCAscaffold_1                                                        29   5.9  
PHYCAscaffold_64                                                       29   7.8  
PHYCAscaffold_29                                                       29   7.8  

>PHYCAscaffold_65 
          Length = 307771

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 68     LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVN 127
              L D++    L E A    VV  S  E G+++        ++GAT  +L     +R ++  
Sbjct: 237194 LPDSFSNESLAESAVALPVVLSSVHEAGEHTATYCSSVDSDGATSWILQLFISDRYILTP 237373

Query: 128    FGSATUPPFT 137
              F +A  PP T
Sbjct: 237374 FETARVPPRT 237403


>PHYCAscaffold_1 
          Length = 2170955

 Score = 29.3 bits (64), Expect = 5.9
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 79     EDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPER 122
              +D P          +G  NSGNGT+++  E A    L   S  R
Sbjct: 355817 DDEPKRCTTAEQVVDGATNSGNGTEQEAVEAADIERLSAGSNRR 355948


>PHYCAscaffold_64 
          Length = 301055

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 56     TSEGLRCVW----KSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEG-A 110
              TS G+ C+         LD++     GED P SS +  SST+       GT  + ++  +
Sbjct: 105464 TSSGVSCMACVPSVVISLDSFSSFN-GEDTPISSTIGASSTKSCTIGATGTASRSSKSES 105640

Query: 111    TCHLLDFASPERPL 124
              +C     + P RPL
Sbjct: 105641 SCFTSICSGPVRPL 105682


>PHYCAscaffold_29 
          Length = 707326

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 30     SVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDA 71
              S  + K  V+++  +K+TR   R   TSE LR +W   +LDA
Sbjct: 339423 STAMRKTKVMMMRTTKATRVTRRASRTSESLRKLWFVTVLDA 339298


  Database: /users/rg/didac/GENOMES/P.capsici/genome.fa
    Posted date:  Sep 30, 2011 12:21 AM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,195,532
Number of Sequences: 917
Number of extensions: 345899
Number of successful extensions: 1709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 910
length of query: 265
length of database: 21,341,249
effective HSP length: 103
effective length of query: 162
effective length of database: 21,246,798
effective search space: 3441981276
effective search space used: 3441981276
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)