TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_28                                                              31   1.1  
contig_21                                                              31   1.1  
contig_25                                                              29   3.1  
contig_34                                                              28   5.3  
contig_16                                                              28   6.9  
contig_31                                                              28   9.1  
contig_23                                                              28   9.1  

>contig_28 
          Length = 1171725

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 9      LITLQILPVFFSNCLFLALYDSVILLKHVVLLL 41
              LI L +  +FFS C F AL+ S ++ +H  LLL
Sbjct: 345621 LIVLWVCSLFFSCCFFPALHPSCLINEHAHLLL 345719



 Score = 28.1 bits (61), Expect = 6.9
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
 Frame = +1

Query: 10     ITLQILPVFFSNCLFLAL----------YDSVILLKHVVLLLSRSKSTR--GEWRRMLT 56
              + L +   FF +CLF +L           D + L  H++L    S+ TR  GE +RMLT
Sbjct: 113863 VCLSLCVAFFLSCLFFSL*FTPWVCVHVIDILHLETHLLLFSGVSRCTREWGEGKRMLT 114039


>contig_21 
          Length = 767234

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
 Frame = -2

Query: 57     SEGLRCVWKSF-LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLL 115
              SEG R  +  F   D+  +++   +A ++       ++G  ++ + + E  A+    HLL
Sbjct: 589378 SEGSRTGYSLFDWYDSVTELETSHEADSAVAAAKGGSKGSGSASDTSYEAAADCRRSHLL 589199

Query: 116    ----DFASPE--RPLVVNFGSATUPPFTSQL 140
                   +  PE  +PLV +  + T PPF S +
Sbjct: 589198 RSRYTYVMPEDLQPLVASRWAGTYPPFVSAI 589106


>contig_25 
          Length = 897883

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 166    PSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLE-RFSLPP 206
              PS+   +   S    EVK HQ QEDRC A   L   R   PP
Sbjct: 176960 PSNNLRVMQRSLTETEVKSHQ*QEDRCGATAGLCRGRTGEPP 176835


>contig_34 
          Length = 1750858

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 134    PPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCA 193
              PPF +  P++ +   +FSS + F       AHPS+  + P          +H  + D CA
Sbjct: 176430 PPFLALAPSYPRDSGQFSSSSSF-------AHPSEASSPP----------RHPRRRDLCA 176302

Query: 194    AAQQ 197
              A  Q
Sbjct: 176301 ARLQ 176290


>contig_16 
          Length = 698406

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 99     GNGTQEKIAEGATCHLLDFASPERPLVVNF 128
              G G +++ A+G+ CH L      RPL + F
Sbjct: 575072 GRGEKQEGAQGSPCHALSHTGIRRPLTIVF 575161


>contig_31 
          Length = 1531288

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 113     HLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEF 150
               HL  F+  ERP +  + +   PPF +QLP   + +  F
Sbjct: 1218349 HLFPFSPSERPYIAIYANDAKPPF-AQLPRQARFLPAF 1218239


>contig_23 
          Length = 783272

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 81     APNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSAT 132
              AP  S    +S  G   S + +Q ++   +TC      SPE P +    SAT
Sbjct: 232106 APAVSSTSDNSAAGAGPSSSSSQPQLPLSSTCEAAGVRSPESPSLCTDDSAT 232261


  Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa
    Posted date:  Oct 4, 2011  6:44 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,145,170
Number of Sequences: 36
Number of extensions: 237996
Number of successful extensions: 1310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 201
length of query: 265
length of database: 10,814,999
effective HSP length: 98
effective length of query: 167
effective length of database: 10,811,471
effective search space: 1805515657
effective search space used: 1805515657
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)