TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 3680 sequences; 15,362,869 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFNH01002544.1| Gregarina niphandrodes asmbl.3275, whole geno... 30 1.1 gb|AFNH01003424.1| Gregarina niphandrodes asmbl.766, whole genom... 29 1.4 gb|AFNH01002311.1| Gregarina niphandrodes asmbl.3058, whole geno... 28 2.4 gb|AFNH01002446.1| Gregarina niphandrodes asmbl.3186, whole geno... 28 4.1 gb|AFNH01002054.1| Gregarina niphandrodes asmbl.2826, whole geno... 28 4.1 gb|AFNH01001550.1| Gregarina niphandrodes asmbl.2363, whole geno... 28 4.1 gb|AFNH01002454.1| Gregarina niphandrodes asmbl.3193, whole geno... 27 7.0 gb|AFNH01001981.1| Gregarina niphandrodes asmbl.2758, whole geno... 27 9.2 gb|AFNH01000707.1| Gregarina niphandrodes asmbl.16012, whole gen... 27 9.2 >gb|AFNH01002544.1| Gregarina niphandrodes asmbl.3275, whole genome shotgun sequence Length = 8050 Score = 29.6 bits (65), Expect = 1.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -2 Query: 36 HVVLLLSRSKSTRGEWRRMLTSEGLRCVW 64 +V++L S + G W R L S G RCVW Sbjct: 7908 NVLVLSSNDAPSWGRWNRDLRSFGRRCVW 7822 >gb|AFNH01003424.1| Gregarina niphandrodes asmbl.766, whole genome shotgun sequence Length = 2407 Score = 29.3 bits (64), Expect = 1.4 Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +3 Query: 167 SDGWAIPGDSSLSFE---VKKHQNQEDRCAAAQQLLERFSL 204 S W I L FE V H QE RCA A +LLERF L Sbjct: 477 SQAWNI--SQRLGFEECGVICHTPQETRCAIATRLLERFPL 593 >gb|AFNH01002311.1| Gregarina niphandrodes asmbl.3058, whole genome shotgun sequence Length = 31647 Score = 28.5 bits (62), Expect = 2.4 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +3 Query: 68 LLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDF 117 L +A V LGE PN+++ S G N+ G+ + G LLDF Sbjct: 22668 LEEAMAAVSLGESVPNATLGVAGSVGVGPNAAVGSSAAVGSGGV-DLLDF 22814 >gb|AFNH01002446.1| Gregarina niphandrodes asmbl.3186, whole genome shotgun sequence Length = 46593 Score = 27.7 bits (60), Expect = 4.1 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = +3 Query: 17 VFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLR 61 VF ++C A + S++L+KH+ + S ++R RML E LR Sbjct: 22833 VFMAHCS--AQHSSLLLIKHLARVRIGSNASRSSATRML*MESLR 22961 >gb|AFNH01002054.1| Gregarina niphandrodes asmbl.2826, whole genome shotgun sequence Length = 1485 Score = 27.7 bits (60), Expect = 4.1 Identities = 20/84 (23%), Positives = 34/84 (40%) Frame = +1 Query: 26 ALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSS 85 A YD I ++ L + S + W +L + L + L +++ + N Sbjct: 1147 AEYDDFIAFNNIAFLATISGKPKRSWPSVLCKKALEYAAVAVALGLFERWCASDGYWND- 1323 Query: 86 VVHVSSTEGGDNSGNGTQEKIAEG 109 V S++ G NGT +AEG Sbjct: 1324 ---VRSSQNGTTPANGTGGPLAEG 1386 >gb|AFNH01001550.1| Gregarina niphandrodes asmbl.2363, whole genome shotgun sequence Length = 2245 Score = 27.7 bits (60), Expect = 4.1 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = -3 Query: 157 LLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMD 216 L+ Y+ P+D W + S L KK E+ Q +E+F A R+D Sbjct: 773 LVTYLGGCSPTD*WLVVEFSGLFVNNKKSATVEEYYTHCSQSVEKFMAVQLGVCCARRLD 594 Query: 217 NNA 219 +N+ Sbjct: 593 SNS 585 >gb|AFNH01002454.1| Gregarina niphandrodes asmbl.3193, whole genome shotgun sequence Length = 8696 Score = 26.9 bits (58), Expect = 7.0 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = -1 Query: 65 KSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGT 102 KSFL +AY + P S VH+ S G +SG+GT Sbjct: 2303 KSFL-NAYFTLLWAAQYPQSIGVHIHSGSGTSSSGSGT 2193 >gb|AFNH01001981.1| Gregarina niphandrodes asmbl.2758, whole genome shotgun sequence Length = 8956 Score = 26.6 bits (57), Expect = 9.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +1 Query: 38 VLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYK 73 +L+ S ++R + + L+S RCV SFL +K Sbjct: 4786 ILITSNESTSRSKETKRLSSSSTRCVGSSFLTRFWK 4893 >gb|AFNH01000707.1| Gregarina niphandrodes asmbl.16012, whole genome shotgun sequence Length = 77023 Score = 26.6 bits (57), Expect = 9.2 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 15/78 (19%) Frame = -1 Query: 52 RRMLTSEGLRCVWKSFLLDAYKQV---------------KLGEDAPNSSVVHVSSTEGGD 96 RR EG R +W +LD++ Q L + P S + + G Sbjct: 40321 RRFCRKEGGRSLWVGSILDSWFQPL*KRLSP**CAANMRALSQICPTSFMFQKTFELGLT 40142 Query: 97 NSGNGTQEKIAEGATCHL 114 +GN T + G TC L Sbjct: 40141 ETGNSTSDPPIAGGTCWL 40088 Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa Posted date: Sep 29, 2011 11:25 PM Number of letters in database: 15,362,869 Number of sequences in database: 3680 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,567,233 Number of Sequences: 3680 Number of extensions: 88397 Number of successful extensions: 481 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 449 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 481 length of query: 265 length of database: 5,120,956 effective HSP length: 93 effective length of query: 172 effective length of database: 4,778,716 effective search space: 821939152 effective search space used: 821939152 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.6 bits)