TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 271 sequences; 80,540,407 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value scaffold_9 33 0.67 scaffold_23 32 1.5 scaffold_2 32 1.5 scaffold_63 31 2.5 scaffold_11 31 2.5 scaffold_1 31 2.5 scaffold_82 29 7.4 scaffold_53 29 7.4 scaffold_13 29 9.7 scaffold_8 29 9.7 >scaffold_9 Length = 2734635 Score = 32.7 bits (73), Expect = 0.67 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Frame = -1 Query: 34 LKHVVLLLSRSKSTRG---------EWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNS 84 +K V+ +LS+ S+ + +L GL +W S A+K K N+ Sbjct: 896808 IKKVIKILSKKSSSESIKYLIEMTLTTKSILRCLGLMLLW-SIEAVAWKAKK------NT 896650 Query: 85 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 144 + + S +GGD E+ E + + ++ +V+ F S PP P F Sbjct: 896649 PIHQLLSIKGGDIQNLQCLEETNEVVFKNSIH---DDQLVVIYFASKNCPPCKRVAPIFE 896479 Query: 145 KLVEEFSSVADFLLVYIDE 163 +L EEF F V +DE Sbjct: 896478 ELSEEFEDRVVFCKVNVDE 896422 Score = 28.9 bits (63), Expect = 9.7 Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 7/197 (3%) Frame = +2 Query: 33 LLKHVVLLLSRSKSTRGEWRRMLT-SEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSS 91 L K +LLL ++ GE +T +EG+ + F++DA+ + + Sbjct: 2215916 LNKGEILLLENTRFDIGETTNDMTLAEGMGKMADYFVMDAFGTAHRAHSSTAGVTNFMKK 2216095 Query: 92 TEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFS 151 + G + K +GA P++P++ G A ++++P L+++ Sbjct: 2216096 SAAGFLLDK--ELKYLQGAV------DDPKKPMMAIVGGAKV---STKIPVIESLMDK-- 2216236 Query: 152 SVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFS------LP 205 D +LV G +L +E+ ++D A L+++ L Sbjct: 2216237 --CDTILV-------GGGMIFTFYKALGYEIGGSLVEDDMVELAATLMKKAEEKGVKMLL 2216389 Query: 206 PQCRVVADRMDNNANIA 222 P +VAD+ DN+AN A Sbjct: 2216390 PTDVIVADKFDNDANTA 2216440 >scaffold_23 Length = 885465 Score = 31.6 bits (70), Expect = 1.5 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 123 PLVVNFGSATUPPFTSQLPAFRKLVEE 149 P V+ G+AT PP +LP F KLVE+ Sbjct: 724308 PYTVSVGNATKPPCRRRLPHFSKLVED 724228 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +1 Query: 23 LFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVW 64 L L LY ++LLKH+V+L+ T+G WR+ + + +R W Sbjct: 31276 LLLLLYYLLVLLKHLVMLI-----TQGWWRKN-SRKIIRATW 31383 >scaffold_2 Length = 3822992 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Frame = +3 Query: 125 VVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLL-------VYIDEAHPSDGWAIPGDSS 177 V N+ P + + + RKL+ +F A +L V + + P D W P ++ Sbjct: 3812043 VANYALGVKGPNPAGIESNRKLIGDFLKSAQHILTDNGEIVVTLKTSAPYDRWDFPNFTT 3812222 Query: 178 LSFEVKKHQNQED 190 E K H N +D Sbjct: 3812223 YDIEPKSHHNFQD 3812261 >scaffold_63 Length = 289507 Score = 30.8 bits (68), Expect = 2.5 Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 9/139 (6%) Frame = -3 Query: 34 LKHVVLLLSRSKSTRG---------EWRRMLTSEGLRCVWKSFLLDAYKQVKLGEDAPNS 84 +K V+ +LS+ S+ + +L GL +W S A+K K D P Sbjct: 149816 IKKVIKILSKKSSSESIKYLIEMTLTTKSILRYLGLMLLW-SIEAVAWKAKK---DTP-- 149655 Query: 85 SVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLPAFR 144 + + S +GGD E+ E + + ++ +V+ F S PP P F Sbjct: 149654 -IHQLLSIKGGDIQNLQCLEETNEVVFKNSIH---DDQLVVIYFASKNCPPCKRVAPIFE 149487 Query: 145 KLVEEFSSVADFLLVYIDE 163 +L EEF F V +DE Sbjct: 149486 ELSEEFEDRVVFCKVNVDE 149430 >scaffold_11 Length = 1700871 Score = 30.8 bits (68), Expect = 2.5 Identities = 48/206 (23%), Positives = 82/206 (39%), Gaps = 16/206 (7%) Frame = +2 Query: 33 LLKHVVLLLSRSKSTRGEWRR-MLTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSS 91 L K +LLL ++ GE M+ +EG+ + F++DA+ SS Sbjct: 692885 LNKGEILLLENTRFDIGETTNDMILAEGMGKMADYFVMDAFGTAHRAH----------SS 693034 Query: 92 TEGGDNSGNGTQEKIAEGATCHLLD---------FASPERPLVVNFGSATUPPFTSQLPA 142 T G N + E A LLD P++P++ G A ++++P Sbjct: 693035 TAGVTNF-------MKESAAGFLLDKELKYLQGAVDDPKKPMMAIVGGAKV---STKIPV 693184 Query: 143 FRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERF 202 L+++ D +LV G +L +E+ ++D A L+++ Sbjct: 693185 IESLLDK----CDTILV-------GGGMIFTFYKALGYEIGGSLVEDDMVELAATLMKKA 693331 Query: 203 S------LPPQCRVVADRMDNNANIA 222 L P +VAD+ DN+AN A Sbjct: 693332 EEKGVKMLLPTDVIVADKFDNDANTA 693409 >scaffold_1 Length = 5926375 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/29 (51%), Positives = 20/29 (68%) Frame = +2 Query: 19 FSNCLFLALYDSVILLKHVVLLLSRSKST 47 FS+C FL S++L+ VLLLSRS+ T Sbjct: 4165088 FSSCCFLLFLSSIVLVVI*VLLLSRSRHT 4165174 >scaffold_82 Length = 193964 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/33 (54%), Positives = 21/33 (63%) Frame = +1 Query: 15 LPVFFSNCLFLALYDSVILLKHVVLLLSRSKST 47 LP F N LFL L ++L VVLL S+SKST Sbjct: 58873 LPAGFFNFLFLLL----LMLPRVVLLTSKSKST 58959 >scaffold_53 Length = 339683 Score = 29.3 bits (64), Expect = 7.4 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Frame = -1 Query: 117 FASPERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAH-PSDGWAIPGD 175 F S LV F PP + +PA +K++ + L+ YID A PSD A+P D Sbjct: 11714 FWSENFRLVCLFFELNIPP--A*IPALKKMISRI--LWSMLINYIDCASSPSDSSAMPSD 11547 Query: 176 SSLSFEVKKH 185 S +K H Sbjct: 11546 SDTVVILKNH 11517 >scaffold_13 Length = 1481013 Score = 28.9 bits (63), Expect = 9.7 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = -1 Query: 23 LFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVW 64 L L LY ++LLKH+V+L+ T+G WR+ + + +R W Sbjct: 1257588 LLLLLYYLLVLLKHLVMLI-----TQGWWRKN-SRKIIRATW 1257481 >scaffold_8 Length = 2651504 Score = 28.9 bits (63), Expect = 9.7 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -2 Query: 123 PLVVNFGSATUPPFTSQLPAFRKLVEEFSSV 153 P+VVNFG+ P S++PA +K+V ++ V Sbjct: 1453564 PMVVNFGNKC*PNVPSRVPADQKVVSKYFPV 1453472 Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa Posted date: Sep 29, 2011 10:40 PM Number of letters in database: 80,540,407 Number of sequences in database: 271 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,000,204 Number of Sequences: 271 Number of extensions: 392383 Number of successful extensions: 2117 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 1824 Number of HSP's gapped (non-prelim): 755 length of query: 265 length of database: 26,846,802 effective HSP length: 105 effective length of query: 160 effective length of database: 26,818,347 effective search space: 4290935520 effective search space used: 4290935520 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 63 (28.9 bits)