TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaff...    44   1e-04
gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaff...    31   1.0  
gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic scaff...    29   3.0  

>gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaffold
              Scf_EU5ZYIE01EUG8B-5, whole genome shotgun sequence
          Length = 941765

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 17/57 (29%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +3

Query: 210    VVADRMDNNANIAYGVAFERVCIVQRQK-IAYLGGKGPFSYNLQEVRHWLEKNFSKR 265
              ++ D MDNN    Y    ER+ +++  K  +Y+GG GPF +  ++V+ +L+  ++++
Sbjct: 155685 ILVDLMDNNFQAGYDAVPERIFVIENNKTFSYVGGPGPFEFFPEQVKEYLDNRYNQQ 155855



 Score = 33.5 bits (75), Expect = 0.16
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 143    FRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGD 175
              F  + +E+       +VY+ E HPSD W + GD
Sbjct: 155411 FESIYQEYKDKVQCYIVYLKEMHPSDEWYVGGD 155509


>gb|GL883008.1| Dictyostelium fasciculatum unplaced genomic scaffold
               Scf_Dfasci-G-o-80e12.f1-5, whole genome shotgun sequence
          Length = 2750715

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 8       LLITLQILPVFFSNCLFLALYDSVILLKHVVLL 40
               +LI + I+ + F  C F  +YD  +LL H++LL
Sbjct: 1919503 ILIVVVIIIITFCLCFFFFIYDDPLLLHHLLLL 1919601


>gb|GL883014.1| Dictyostelium fasciculatum unplaced genomic scaffold
              Scf_Dfasci-F-a-11f03.f1-5, whole genome shotgun sequence
          Length = 911335

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 22     CLFLALYDSVILLKHVVLLLSRSKSTRGEWRRM 54
              C  L LY S++L   +VLLL       G+WRR+
Sbjct: 671186 CADLYLYQSIVLFTKMVLLLMLCFIRVGQWRRI 671088


  Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa
    Posted date:  Sep 29, 2011 10:07 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,930,101
Number of Sequences: 25
Number of extensions: 146562
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 74
length of query: 265
length of database: 10,339,736
effective HSP length: 98
effective length of query: 167
effective length of database: 10,337,286
effective search space: 1726326762
effective search space used: 1726326762
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)