TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Homo sapiens # Complete (265 letters) Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa 6 sequences; 33,943,072 total letters Searching......done Score E Sequences producing significant alignments: (bits) Value gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole ... 92 5e-19 gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole ... 29 3.2 gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole ... 29 4.2 gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole ... 28 5.5 >gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence Length = 8484197 Score = 91.7 bits (226), Expect = 5e-19 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Frame = +3 Query: 121 ERPLVVNFGSATUPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSF 180 +RP+V+ GS T PPF ++ F+ + +F D +VY+ E HP+D W I GD +S Sbjct: 5885022 DRPMVLICGSFT*PPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGGD-EISL 5885198 Query: 181 EVKKHQNQEDRCAAAQQLLERFSLPPQCRV--VADRMDNNANIAYGVAFERVCIVQRQKI 238 ++ + EDR + L E P C + + D+MDNN N Y ER+ +++ +K Sbjct: 5885199 CYRQPKTMEDRREIIKDLKE---YAPFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKF 5885369 Query: 239 AYLGGKGPFSYNLQEVRHWLEKNF 262 Y+GG GPF + +E+R +L K + Sbjct: 5885370 KYVGGPGPFGFIPEELREFLTKRY 5885441 >gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence Length = 3602379 Score = 29.3 bits (64), Expect = 3.2 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 55 LTSEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIA 107 LT G+ K L + L AP++S++H + + D NGT KI+ Sbjct: 3275036 LTGFGVPSSSKKISLRVELSITLFGGAPSTSIIHANCSGSSDPGNNGTPVKIS 3274878 Score = 28.5 bits (62), Expect = 5.5 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +2 Query: 148 EEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSF--EVKKHQNQEDRCAAAQQLLE 200 +EF+ + + V+ID A W P LSF V HQ+ ++ +Q+LE Sbjct: 1847114 KEFNHITPYPTVFIDMAEALRDWLKPVVQELSFLKPVIHHQHADNEEITVEQVLE 1847278 >gb|CM000152.2| Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence Length = 6357299 Score = 28.9 bits (63), Expect = 4.2 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -1 Query: 124 LVVNFGSATUPPFTSQLPAFRKLVE-EFSSVADFLLVYI 161 L V+ G+AT PPF LPA K + F+ +A FLL +I Sbjct: 1366994 LPVSVGNATNPPFLILLPASIKFSKVGFTILAKFLLSHI 1366878 Score = 27.7 bits (60), Expect = 9.4 Identities = 25/80 (31%), Positives = 39/80 (48%) Frame = -3 Query: 10 ITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLL 69 ++L +LP SN + +D ILL LL++ S S G L+S + + SFL Sbjct: 6204141 LSLLLLPPLGSNKFLSSAFDCNILLSEYSLLINESFSVGGF**FSLSSSPI--ILSSFL- 6203971 Query: 70 DAYKQVKLGEDAPNSSVVHV 89 + ++K D P+ S V V Sbjct: 6203970 --FTKIKFAIDKPSISHVAV 6203917 >gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence Length = 4923596 Score = 28.5 bits (62), Expect = 5.5 Identities = 15/37 (40%), Positives = 25/37 (67%) Frame = +2 Query: 5 SVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLL 41 +V+LL+ L +L + F L L L+D ++LL ++LLL Sbjct: 2799911 TVELLLLLLLLLLLFLKLLLLNLFDLLLLLLLLLLLL 2800021 Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa Posted date: Sep 29, 2011 8:31 PM Number of letters in database: 33,943,072 Number of sequences in database: 6 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,394,428 Number of Sequences: 6 Number of extensions: 131923 Number of successful extensions: 1177 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 971 Number of HSP's gapped (non-prelim): 460 length of query: 265 length of database: 11,314,357 effective HSP length: 99 effective length of query: 166 effective length of database: 11,313,763 effective search space: 1878084658 effective search space used: 1878084658 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)