TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig1042 |  | 1 to 246505                                         32   0.54 
Cf_Contig1051 |  | 1 to 359244                                         30   1.6  
Cf_Contig952 |  | 1 to 84940                                           30   2.1  
Cf_Contig819 |  | 1 to 113412                                          30   2.1  
Cf_Contig1050 |  | 1 to 279392                                         29   4.6  
Cf_Contig885 |  | 1 to 124534                                          29   4.6  
Cf_Contig1052 |  | 1 to 356154                                         28   7.8  
Cf_Contig805 |  | 1 to 81656                                           28   7.8  

>Cf_Contig1042 |  | 1 to 246505
          Length = 246505

 Score = 32.0 bits (71), Expect = 0.54
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -2

Query: 57     SEGLRCVWKSFLLDAYKQVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIA-EG-ATCHL 114
              S GL+C   SF+  A     +   + NSS    ++ +   N G    +++A EG A C L
Sbjct: 197025 SVGLQCTCDSFVGTAATGAAVSSSSSNSSAASHTAVDPAANDGRRIADEVAIEGIAYCRL 196846

Query: 115    LDFASPERPLVVNF 128
              L     E+P   +F
Sbjct: 196845 LAIVKEEKPSAHDF 196804


>Cf_Contig1051 |  | 1 to 359244
          Length = 359244

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 1      MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHV 37
              +   SVD L+ + + P FFS+    AL+  ++ + HV
Sbjct: 175019 LNCFSVDCLLLMFLFPFFFSSSFMFALFSPLLFILHV 174909



 Score = 28.5 bits (62), Expect = 6.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 17    VFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWR 52
             VFFS C+F      V L  HV L+    + T  EWR
Sbjct: 39967 VFFSLCVFSGAQRPVHLYVHVCLMELPHRKTAREWR 39860


>Cf_Contig952 |  | 1 to 84940
          Length = 84940

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +3

Query: 16    PVFFSNCLFLALYDSVILL-----KHVVLLLSRSKSTRG 49
             PVFF  CLFL L  S+ILL     + V L LS+   TRG
Sbjct: 28683 PVFFFRCLFLPLALSLILLLLLLVEFVGLRLSKQILTRG 28799


>Cf_Contig819 |  | 1 to 113412
          Length = 113412

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 14    ILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWR 52
             + P FFS C+F      V L  HV L+    + T  EWR
Sbjct: 98892 LFPCFFSLCVFSGAQRPVHLYVHVCLMELPHRKTAREWR 99008


>Cf_Contig1050 |  | 1 to 279392
          Length = 279392

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 7      DLLITLQILPVFFSNCLFLAL 27
              DLL+T++ +P  F+ CLFL+L
Sbjct: 117985 DLLVTMRFIPANFALCLFLSL 117923



 Score = 28.1 bits (61), Expect = 7.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 183    KKHQNQEDRCAAAQQLLERFSLPPQCRVVA 212
              + H+ Q  RC  A +   R + PP CR +A
Sbjct: 191821 RSHRAQPPRCRGASERERRCTAPPDCRRIA 191732


>Cf_Contig885 |  | 1 to 124534
          Length = 124534

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = -2

Query: 6     VDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWK 65
             VD L+ L +LP  F  C+   +   + LL+H +L+ S      G       S  L   W+
Sbjct: 19974 VDRLLRLHLLPFIFIKCINECVKCLLCLLRHRLLVFSCCLQRHG-------SRTLVARWR 19816

Query: 66    SFLLDAYK 73
             S  +DA +
Sbjct: 19815 SRRIDALR 19792


>Cf_Contig1052 |  | 1 to 356154
          Length = 356154

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 92    TEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATUPPFTSQLP 141
             T   D+SG+G++  +  GAT  +  FA+  R    N  +   PPF+  LP
Sbjct: 49318 TTVADDSGSGSRLGLGGGATVSVPAFANRAR----NSAALRSPPFSLSLP 49455


>Cf_Contig805 |  | 1 to 81656
          Length = 81656

 Score = 28.1 bits (61), Expect = 7.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 6     VDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLS 42
             VD ++ L +LP  FS C+   +   + LL+H +L+ S
Sbjct: 69856 VDRVLRLHLLPFIFSECIDECVKRFLCLLRHRLLVFS 69746


  Database: /users/rg/didac/GENOMES/C.fasciculata/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,720,781
Number of Sequences: 1089
Number of extensions: 266258
Number of successful extensions: 1770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1392
Number of HSP's gapped (non-prelim): 715
length of query: 265
length of database: 12,349,441
effective HSP length: 99
effective length of query: 166
effective length of database: 12,241,630
effective search space: 2032110580
effective search space used: 2032110580
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)