TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADNL01002689.1| Astrammina rara contig03176, whole genome sho...    25   1.5  
gb|ADNL01002587.1| Astrammina rara contig03062, whole genome sho...    24   2.6  
gb|ADNL01002253.1| Astrammina rara contig02689, whole genome sho...    24   2.6  
gb|ADNL01000209.1| Astrammina rara contig00219, whole genome sho...    23   4.5  
gb|ADNL01002093.1| Astrammina rara contig02498, whole genome sho...    23   5.9  
gb|ADNL01003135.1| Astrammina rara contig02446, whole genome sho...    23   7.7  
gb|ADNL01001590.1| Astrammina rara contig01885, whole genome sho...    23   7.7  
gb|ADNL01001383.1| Astrammina rara contig01638, whole genome sho...    23   7.7  

>gb|ADNL01002689.1| Astrammina rara contig03176, whole genome shotgun sequence
          Length = 506

 Score = 25.0 bits (53), Expect = 1.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 206 PQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPF 247
           PQ R +  R+ NNA     V FE  C V +   A    K PF
Sbjct: 54  PQFRAIEPRL-NNARFHTWVVFETACSVLKGAAAKQRHKVPF 176


>gb|ADNL01002587.1| Astrammina rara contig03062, whole genome shotgun sequence
          Length = 1906

 Score = 24.3 bits (51), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 155  DFLLVYIDEAHPSDGWAI 172
            + ++VY++ +HPS  W I
Sbjct: 1270 NLIIVYLNTSHPSSNWYI 1217


>gb|ADNL01002253.1| Astrammina rara contig02689, whole genome shotgun sequence
          Length = 4647

 Score = 24.3 bits (51), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 134  PPFTSQLPAFRKLVEEFSSVADFLLVYI 161
            PPF S +P+F   +  F  +A  L  Y+
Sbjct: 2811 PPFVSVIPSFNLFIIMFLPIAFILSSYV 2728


>gb|ADNL01000209.1| Astrammina rara contig00219, whole genome shotgun sequence
          Length = 6385

 Score = 23.5 bits (49), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 125  VVNFGSATUPPFTSQLPAFRKLV 147
            +V+  ++T PPF S + + RKLV
Sbjct: 1383 LVSLHTSTEPPFASVIRSARKLV 1315


>gb|ADNL01002093.1| Astrammina rara contig02498, whole genome shotgun sequence
          Length = 207

 Score = 23.1 bits (48), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 9   LITLQILPVFFSNCLFLALYDSVILLKHVV 38
           ++ L++LP+FF   ++     S IL+ HV+
Sbjct: 116 ILYLRLLPLFFLFIIYRPELTSPILVLHVI 27


>gb|ADNL01003135.1| Astrammina rara contig02446, whole genome shotgun sequence
          Length = 173

 Score = 22.7 bits (47), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 9  LITLQILPVFFSNCLFLALYDSVILLKHVVL 39
          L+    L +F   C F  L+   +L+ HV+L
Sbjct: 93 LLLFLFLLLFLDRCWFFWLFHLFVLIFHVLL 1


>gb|ADNL01001590.1| Astrammina rara contig01885, whole genome shotgun sequence
          Length = 482

 Score = 22.7 bits (47), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 62  CVWKSFLLDAYKQVK 76
           CVWKSF L  + Q +
Sbjct: 229 CVWKSFRLRTFAQFR 273


>gb|ADNL01001383.1| Astrammina rara contig01638, whole genome shotgun sequence
          Length = 707

 Score = 22.7 bits (47), Expect = 7.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 9   LITLQILPVFFSNCL 23
           L+ LQILP+F  +C+
Sbjct: 523 LMGLQILPIFMEDCV 479


  Database: /users/rg/didac/GENOMES/A.rara/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,035
Number of Sequences: 3231
Number of extensions: 5813
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 265
length of database: 483,365
effective HSP length: 73
effective length of query: 192
effective length of database: 247,502
effective search space: 47520384
effective search space used: 47520384
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)