TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000002_1.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Homo sapiens # Complete
         (265 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824331.1| Albugo laibachii Nc14, genomic contig CONTIG_286...    29   3.0  
emb|FR824195.1| Albugo laibachii Nc14, genomic contig CONTIG_150...    28   5.2  
emb|FR824375.1| Albugo laibachii Nc14, genomic contig CONTIG_330...    28   6.8  

>emb|FR824331.1| Albugo laibachii Nc14, genomic contig CONTIG_286_NC14_v4_33156_201
          Length = 33156

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
 Frame = +3

Query: 165  HPSDGWAIPGDSSLSFEVKK---------HQNQEDRCAAAQQLLERFSLPPQCRVVADRM 215
            H  D + I    S +F VKK         H + +  C  +     RFSL PQC +V + M
Sbjct: 4698 HSCDRYHIHSKYSATFGVKK*S*LDYIGRHLSGKSSCITSS----RFSLNPQCSIVEELM 4865

Query: 216  D 216
            D
Sbjct: 4866 D 4868


>emb|FR824195.1| Albugo laibachii Nc14, genomic contig CONTIG_150_NC14_v4_61120_244
          Length = 61120

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +2

Query: 175   DSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQ 234
             DSSL +E++           A+Q ++ F+L  +C         + NIA    +ER+  ++
Sbjct: 39137 DSSLRYELRDQ---------AKQQMDDFNLRQECTFAPSINPISKNIAQPPLYERIPNMR 39289

Query: 235   RQKI 238
             RQK+
Sbjct: 39290 RQKV 39301


>emb|FR824375.1| Albugo laibachii Nc14, genomic contig CONTIG_330_NC14_v4_27965_262
          Length = 27965

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 147   VEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFS 203
             V+  S     + V +D     DG +   DS  S + K+H  +   CAA+Q L E+F+
Sbjct: 19737 VQNCSKHRGMIQVLMDFLRVRDGTSFCRDSFQS-KYKRHSRRRLHCAASQSLSEKFA 19904


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,754,341
Number of Sequences: 3816
Number of extensions: 158588
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 574
length of query: 265
length of database: 10,913,379
effective HSP length: 98
effective length of query: 167
effective length of database: 10,539,411
effective search space: 1760081637
effective search space used: 1760081637
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)