TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.5                                                        28   5.7  
T.congo.pschr.11                                                       27   7.5  
TcIL3000_10_v2.embl                                                    27   7.5  

>T.congo.pschr.5 
          Length = 1517473

 Score = 27.7 bits (60), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 209    YAALPERLYIIQEGRILYKGKSGPWN--YNPEEVRA 242
              Y +LP   YI   GR+L+K     WN  Y+P   RA
Sbjct: 383092 YVSLPTCSYICVCGRLLFKSFLSHWNAEYHPTRPRA 382985


>T.congo.pschr.11 
          Length = 4797796

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -1

Query: 173     NHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGP 232
               NH         A  LL +S  CP  V  + +Q S + A+   R+ +    R  Y  +  P
Sbjct: 3104668 NHALYDCASSVA*YLLQKSTTCPTTVHNVSSQDSDMAASFSFRVQLRGTCRFAYANREPP 3104489



 Score = 26.9 bits (58), Expect = 9.8
 Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
 Frame = +1

Query: 107    IWEFMQGNRPLVLNFGSCTUPSFMFK-----FDQFKRLIEDFSSIADFLVIYIEEAHASD 161
              +W  ++GN  +  +    T P+  F      F++FK L    + +++   +++   H +D
Sbjct: 772426 MWSAVRGNS-IKSSVPRSTRPTSSFNEATSIFERFKSLKHLLTLVSEVYELFLLSRHITD 772602

Query: 162    GWAFKNNMDIRNHQN 176
              G A  +++ +R H +
Sbjct: 772603 GIAVVSHVMLRRHHH 772647


>TcIL3000_10_v2.embl 
          Length = 3612457

 Score = 27.3 bits (59), Expect = 7.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 75      LKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPL 117
               ++ R Q   + T    L+P+CP  R +G R +    + G RP+
Sbjct: 1563193 IRSRAQEGAERTLNASLSPHCPAPRRNGSRHSSSMLLSGGRPM 1563065


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,133,810
Number of Sequences: 11
Number of extensions: 106622
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 184
length of query: 249
length of database: 7,429,315
effective HSP length: 95
effective length of query: 154
effective length of database: 7,428,270
effective search space: 1143953580
effective search space used: 1143953580
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)