TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/S.arctica/genome.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.2788 of Sphaeroforma arctica JP610                          31   3.3  
supercont1.7518 of Sphaeroforma arctica JP610                          30   4.3  

>supercont1.2788 of Sphaeroforma arctica JP610
          Length = 4917

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
 Frame = +1

Query: 34   PDRVKRNILAMGEKTGMTRNPHF----------------SHDNWIPTFFSTQYFWFVLKV 77
            P+R+ R+ L M + T   ++  F                SHD  I   ++T    +   V
Sbjct: 1003 PERIYRDGLNMKKITRKNKSSQFNH*CLFL*GVCQPE*KSHDQHIRYVWTTSSDEYAKYV 1182

Query: 78   RWQRLEDTTELGGLAPNC----PVVRLSGQRCNIWEFMQGNRPLVLNFGSCTUPSFMF 131
            +     +      L  NC    P+VR      N  EF+ GNR L++N    + PSFMF
Sbjct: 1183 K*SVRTNKHTSQ*LKTNCGKAAPLVRFLISSANPKEFLTGNRHLIVNI---SDPSFMF 1347


>supercont1.7518 of Sphaeroforma arctica JP610
          Length = 1411

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = +2

Query: 47  KTGMTRNPHFSHDNWIP------TFFSTQYF 71
           + G T+NPHFS  NW P      TF + Q F
Sbjct: 509 RMGHTKNPHFSCTNWFPIEITL*TFLNNQRF 601


  Database: /users/rg/didac/GENOMES/S.arctica/genome.fa
    Posted date:  Sep 29, 2011  6:14 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,253,931
Number of Sequences: 15618
Number of extensions: 578985
Number of successful extensions: 2482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 1530
length of query: 249
length of database: 40,529,447
effective HSP length: 106
effective length of query: 143
effective length of database: 38,873,939
effective search space: 5558973277
effective search space used: 5558973277
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 64 (29.3 bits)