TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig974 |  | 1 to 8437                                            30   2.0  

>Lt_contig974 |  | 1 to 8437
          Length = 8437

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 61  WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVR 99
           W   FF   +F+F  K+RWQ           +PN P+VR
Sbjct: 352 WTSFFFKASFFFFFYKLRWQL---------YSPNNPLVR 263


  Database: /users/rg/didac/GENOMES/L.tarentolae/genome.fa
    Posted date:  Sep 30, 2011 12:11 AM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,363,664
Number of Sequences: 7267
Number of extensions: 149123
Number of successful extensions: 848
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 669
length of query: 249
length of database: 10,532,946
effective HSP length: 97
effective length of query: 152
effective length of database: 9,828,047
effective search space: 1493863144
effective search space used: 1493863144
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)