TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_34                                                              29   3.7  
contig_27                                                              28   6.3  
contig_30                                                              28   8.2  

>contig_34 
          Length = 1750858

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 33      FPDRVKRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTT 86
               F  R +    +  E+T   R  + SH+ WI   FS   FW +  VR+  + +TT
Sbjct: 1246060 FTRRTR*GRASASEETLSHRQKYTSHNKWI-NEFSLSSFWLMKAVRYSGVLNTT 1245902


>contig_27 
          Length = 1024085

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 92     APNCPVVRLSGQRCNIWEFMQGNRPL 117
              AP+C  VR+SG+   IWE   G R +
Sbjct: 735742 APSCVCVRVSGRGKKIWELK*GGREM 735819


>contig_30 
          Length = 1374157

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 159     ASDGWAFKNNMDIRNHQNLQDRLQAA--HLLLARSPQCP 195
               AS+ +  + +   R+HQ  + RL+ A  HLLL R  +CP
Sbjct: 1219165 ASERFRSRQHRKRRSHQRRRRRLRVAHLHLLLRRQRRCP 1219281


  Database: /users/rg/didac/GENOMES/L.donovani_BPK282/genome.fa
    Posted date:  Oct 4, 2011  6:44 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,536,649
Number of Sequences: 36
Number of extensions: 150004
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 68
length of query: 249
length of database: 10,814,999
effective HSP length: 98
effective length of query: 151
effective length of database: 10,811,471
effective search space: 1632532121
effective search space used: 1632532121
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)