TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFNH01002655.1| Gregarina niphandrodes asmbl.3380, whole geno...    32   0.20 
gb|AFNH01002941.1| Gregarina niphandrodes asmbl.3645, whole geno...    29   1.3  
gb|AFNH01001967.1| Gregarina niphandrodes asmbl.2745, whole geno...    28   2.9  
gb|AFNH01001992.1| Gregarina niphandrodes asmbl.2768, whole geno...    27   4.9  
gb|AFNH01002496.1| Gregarina niphandrodes asmbl.3230, whole geno...    27   8.4  

>gb|AFNH01002655.1| Gregarina niphandrodes asmbl.3380, whole genome shotgun sequence
          Length = 21021

 Score = 32.0 bits (71), Expect = 0.20
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
 Frame = +2

Query: 60   NWIPTFFSTQYFWFVLKVRWQR-------LEDTTELG 89
            N +P F  TQ+FWF+ + RW+        +E T+E G
Sbjct: 1322 NCVPIFLPTQFFWFLERKRWENEVLNCCGVEVTSECG 1432


>gb|AFNH01002941.1| Gregarina niphandrodes asmbl.3645, whole genome shotgun sequence
          Length = 42255

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 22/84 (26%), Positives = 38/84 (45%)
 Frame = +2

Query: 159   ASDGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYI 218
             A DG+  +N++ +  +Q+   ++   +L LA  P       T Q+Q  Q           
Sbjct: 30728 AYDGFYHRNDLTLNTYQDYIKQVGLQYLGLAFLPDL-----TSQHQHGQ----------D 30862

Query: 219   IQEGRILYKGKSGPWNYNPEEVRA 242
             ++EGR L+ G  G W   P+ + A
Sbjct: 30863 VEEGRWLFAGAGGLWQEMPQFLSA 30934


>gb|AFNH01001967.1| Gregarina niphandrodes asmbl.2745, whole genome shotgun sequence
          Length = 8428

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 72  WFVLKVRWQRLEDTTELGGLAPNCPVVRLS 101
           W V  + W RL      G +AP+CP  R S
Sbjct: 229 WRVRSLGWWRLRRVGGFGAMAPSCPTSRPS 318


>gb|AFNH01001992.1| Gregarina niphandrodes asmbl.2768, whole genome shotgun sequence
          Length = 33962

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 20/92 (21%)
 Frame = -1

Query: 178   QDRLQAAHLL--------LARSPQCPVVVDTMQNQSSQLYAALPER-----LYIIQEGRI 224
             QD L++A L         +   P C V V ++Q   S +  A+ ER     +  +Q G +
Sbjct: 14558 QDLLRSAALCATVMRDMGMGEYPLCTVEV-SIQTPFSGIDLAIEERSEKGLMMDLQHGLV 14382

Query: 225   LYK-------GKSGPWNYNPEEVRAVLEKLHS 249
              Y        G SGPW Y P  V   L  L S
Sbjct: 14381 GYTVTTLLLGGISGPWEYAPHIVPVTLRTLDS 14286


>gb|AFNH01002496.1| Gregarina niphandrodes asmbl.3230, whole genome shotgun sequence
          Length = 18089

 Score = 26.6 bits (57), Expect = 8.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 181  LQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKG 228
            LQ   LL   S +C + V    +Q +       + L ++ +GR++Y+G
Sbjct: 1262 LQLMRLLQRLSRECGLTVLATLHQPADRVLETLDHLVLLMQGRVIYQG 1119


  Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa
    Posted date:  Sep 29, 2011 11:25 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,214,184
Number of Sequences: 3680
Number of extensions: 76813
Number of successful extensions: 424
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 337
length of query: 249
length of database: 5,120,956
effective HSP length: 92
effective length of query: 157
effective length of database: 4,782,396
effective search space: 750836172
effective search space used: 750836172
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)