TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_79                                                            30   5.1  
scaffold_38                                                            29   6.7  
scaffold_29                                                            29   6.7  
scaffold_3                                                             29   8.8  

>scaffold_79 
          Length = 225955

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = -2

Query: 156   EAHASDGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPER 215
             E H+ D W F ++M I       D L+A   L+   P+  V+   +   +  + + L   
Sbjct: 70551 EGHSKDLWVFTSHMRIS*QCPFIDYLRAHWTLILSKPKNVVITVLV*RTTRTMLSFLSST 70372

Query: 216   LYIIQEGRILYKGKSGPWNY 235
             + +    +IL+    GPWNY
Sbjct: 70371 IVLGFLVKILH--S*GPWNY 70318


>scaffold_38 
          Length = 562930

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 39     RNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFW 72
              +N LA+  +TG+   PH +H +W+ T  + QYF+
Sbjct: 101817 KNKLAI--ETGIYLAPHIAHSDWLATC*TKQYFY 101912


>scaffold_29 
          Length = 747900

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 39     RNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFW 72
              +N LA+  +TG+   PH +H +W+ T  + QYF+
Sbjct: 475780 KNKLAI--ETGIYLAPHIAHSDWLATC*TKQYFY 475685


>scaffold_3 
          Length = 3437899

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 21/76 (27%)
 Frame = -1

Query: 189     ARSPQCPV------VVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSG----------- 231
               ARSP CP       V+ T+   SS ++  L + + ++ EGR++Y+G+             
Sbjct: 2640640 ARSP-CPKTGLKRRVILTIHQPSSFIWE-LVDNVILLAEGRLMYQGRRAKMEAFFAAAGH 2640467

Query: 232     --PWNYNPEE--VRAV 243
                 P NYNP +  VRA+
Sbjct: 2640466 PTPMNYNPADHYVRAI 2640419


  Database: /users/rg/didac/GENOMES/F.cylindrus/genome.fa
    Posted date:  Sep 29, 2011 10:40 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,771,484
Number of Sequences: 271
Number of extensions: 352080
Number of successful extensions: 1773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1669
Number of HSP's gapped (non-prelim): 335
length of query: 249
length of database: 26,846,802
effective HSP length: 104
effective length of query: 145
effective length of database: 26,818,618
effective search space: 3888699610
effective search space used: 3888699610
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)