TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa 
           25 sequences; 31,019,208 total letters

Searching.........................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaff...    44   1e-04

>gb|GL883025.1| Dictyostelium fasciculatum unplaced genomic scaffold
              Scf_EU5ZYIE01EUG8B-5, whole genome shotgun sequence
          Length = 941765

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +3

Query: 195    PVVVDTMQNQSSQLYAALPERLYIIQEGRIL-YKGKSGPWNYNPEEVRAVLEKLHS 249
              P++VD M N     Y A+PER+++I+  +   Y G  GP+ + PE+V+  L+  ++
Sbjct: 155682 PILVDLMDNNFQAGYDAVPERIFVIENNKTFSYVGGPGPFEFFPEQVKEYLDNRYN 155849


  Database: /users/rg/didac/GENOMES/D.fasciculatum/genome.fa
    Posted date:  Sep 29, 2011 10:07 PM
  Number of letters in database: 31,019,208
  Number of sequences in database:  25
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,644,727
Number of Sequences: 25
Number of extensions: 149534
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 78
length of query: 249
length of database: 10,339,736
effective HSP length: 97
effective length of query: 152
effective length of database: 10,337,311
effective search space: 1571271272
effective search space used: 1571271272
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)