TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole ...    87   9e-18
gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole ...    30   2.3  
gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole ...    29   3.0  
gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole ...    28   6.6  

>gb|CM000151.3| Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence
          Length = 8484197

 Score = 87.4 bits (215), Expect = 9e-18
 Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
 Frame = +3

Query: 114     NRPLVLNFGSCTUPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN---MD 170
               +RP+VL  GS T P F  K   F+ +  DF    D  ++Y++E H +D W    +   + 
Sbjct: 5885022 DRPMVLICGSFT*PPFRDKMCMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGGDEISLC 5885201

Query: 171     IRNHQNLQDRLQAAHLLLARSPQC--PVVVDTMQNQSSQLYAALPERLYIIQEGRILYKG 228
                R  + ++DR +    L   +P C  P ++D M N  +++Y A+PERLY++++ +  Y G
Sbjct: 5885202 YRQPKTMEDRREIIKDLKEYAPFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKFKYVG 5885381

Query: 229     KSGPWNYNPEEVRAVLEK 246
                 GP+ + PEE+R  L K
Sbjct: 5885382 GPGPFGFIPEELREFLTK 5885435


>gb|CM000150.2| Dictyostelium discoideum AX4 chromosome 1, whole genome shotgun sequence
          Length = 4923596

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 70      YFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQGNRPLVLNF 121
               +F+F  K  +++     ++G +AP+       GQ   + EF + ++P+VL F
Sbjct: 2415542 HFFFKKKYIYKKRMTKLKVGNIAPDFEAKNYLGQTVTLKEFKEKSQPIVLYF 2415697


>gb|CM000155.2| Dictyostelium discoideum AX4 chromosome 6, whole genome shotgun sequence
          Length = 3602379

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 38      KRNILAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFV 74
               KRNI    +KT +  NP F+H + I  FF+ +YF+F+
Sbjct: 1021387 KRNIY*NRKKTHI*NNPTFNHHHLI-FFFTYKYFFFL 1021494


>gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4, whole genome shotgun sequence
          Length = 5450249

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 70      YFWFVLKVRWQRLEDTTELGGLAPNCPVVRLS 101
               +F+F  K  W+R +D T L  +   C ++R+S
Sbjct: 4009931 FFFFFFKEHWKRSDDITSLK*IFFFCKIIRIS 4009836


  Database: /users/rg/didac/GENOMES/D.discoideum_AX4/genome.fa
    Posted date:  Sep 29, 2011  8:31 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,852,651
Number of Sequences: 6
Number of extensions: 193210
Number of successful extensions: 1035
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 917
Number of HSP's gapped (non-prelim): 259
length of query: 249
length of database: 11,314,357
effective HSP length: 98
effective length of query: 151
effective length of database: 11,313,769
effective search space: 1708379119
effective search space used: 1708379119
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)