TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADNL01000617.1| Astrammina rara contig00691, whole genome sho...    27   0.50 
gb|ADNL01001134.1| Astrammina rara contig01331, whole genome sho...    23   5.5  
gb|ADNL01000769.1| Astrammina rara contig00880, whole genome sho...    23   7.2  
gb|ADNL01000200.1| Astrammina rara contig00210, whole genome sho...    23   7.2  
gb|ADNL01002808.1| Astrammina rara contig03299, whole genome sho...    22   9.4  
gb|ADNL01001283.1| Astrammina rara contig01512, whole genome sho...    22   9.4  

>gb|ADNL01000617.1| Astrammina rara contig00691, whole genome shotgun sequence
          Length = 644

 Score = 26.6 bits (57), Expect = 0.50
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -2

Query: 65  FFSTQYFWFVLKVRWQRL----EDTTELGGLAP 93
           FF +QYFW+ + + W  L       T  G L P
Sbjct: 232 FFQSQYFWYCVVLEWTYLSIFIHQRTLFGDLIP 134


>gb|ADNL01001134.1| Astrammina rara contig01331, whole genome shotgun sequence
          Length = 241

 Score = 23.1 bits (48), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 38  KRNILAMGEKT-----GMTRNPHFSHDNWIPTFFSTQYFWFVLKVR 78
           K N+L+  + T       T    F+H  +  T+F+T  F +V+ +R
Sbjct: 179 KDNLLSRADHTTHVTLNFTTIATFNHATFFLTYFTTFSFTYVISLR 42


>gb|ADNL01000769.1| Astrammina rara contig00880, whole genome shotgun sequence
          Length = 406

 Score = 22.7 bits (47), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 105 CNIWEFMQGNRPLVLNF 121
           CNIW F+    P +L F
Sbjct: 124 CNIWYFLNNXTPALL*F 174


>gb|ADNL01000200.1| Astrammina rara contig00210, whole genome shotgun sequence
          Length = 1151

 Score = 22.7 bits (47), Expect = 7.2
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
 Frame = -1

Query: 89  GGLAPNCPVVRLSGQRCN-----IWE 109
           G    +CP V   G RCN     +WE
Sbjct: 113 GSCGYHCPAVVFRGSRCNWSMNGLWE 36


>gb|ADNL01002808.1| Astrammina rara contig03299, whole genome shotgun sequence
          Length = 743

 Score = 22.3 bits (46), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 190 RSPQCPVVVDTMQNQSSQLYAALP 213
           R PQ PVVV     +  +LY   P
Sbjct: 657 RPPQSPVVVGRAWQRREELYGESP 728


>gb|ADNL01001283.1| Astrammina rara contig01512, whole genome shotgun sequence
          Length = 522

 Score = 22.3 bits (46), Expect = 9.4
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
 Frame = -2

Query: 72  WFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCN----IWEFMQ 112
           W   K+RWQRL   T  G   P C        +CN     W F Q
Sbjct: 143 WQARKLRWQRL---TVSGVAYPTCKC------KCNQDEDEWHFAQ 36


  Database: /users/rg/didac/GENOMES/A.rara/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,840
Number of Sequences: 3231
Number of extensions: 5582
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 249
length of database: 483,365
effective HSP length: 72
effective length of query: 177
effective length of database: 250,733
effective search space: 44379741
effective search space used: 44379741
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)