TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000001_1.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Homo sapiens # Complete
         (249 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824064.1| Albugo laibachii Nc14, genomic contig CONTIG_19_...    30   2.1  
emb|FR824135.1| Albugo laibachii Nc14, genomic contig CONTIG_90_...    29   3.6  

>emb|FR824064.1| Albugo laibachii Nc14, genomic contig CONTIG_19_NC14_v4_197315_238
          Length = 197315

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 57     SHDNWIPTFFSTQYFWFVLKVRWQRLE 83
              +H+NWI   FS++YFW + KV ++ +E
Sbjct: 124733 NHNNWIEFQFSSKYFW-LYKVPYKHVE 124656


>emb|FR824135.1| Albugo laibachii Nc14, genomic contig CONTIG_90_NC14_v4_83073_248
          Length = 83073

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 54    PHFSHDNWIPTFFSTQYFWFVLKVRWQR 81
             PHF H +W+  F S Q  +  L  RW R
Sbjct: 62091 PHFMHLHWVEKFLSVQIRYSWLARRWFR 62174


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,925,063
Number of Sequences: 3816
Number of extensions: 143634
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 456
length of query: 249
length of database: 10,913,379
effective HSP length: 98
effective length of query: 151
effective length of database: 10,539,411
effective search space: 1591451061
effective search space used: 1591451061
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)