TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000028_1.0 # Protein # Selenoprotein U3 (SelU3) # Homo
sapiens # Complete
         (198 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    79   2e-15

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4,
              whole genome shotgun sequence
          Length = 5450249

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 44/114 (38%), Positives = 67/114 (58%)
 Frame = +1

Query: 20     GEAVELRSLWREHACVVAGLRRFGXVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQ 79
              G+ + L SL+     VVA  RRFG ++CR  A DLS+L   LD+ G+ LVG+G +  GL+
Sbjct: 288457 GKELLLTSLYENKRIVVAIFRRFGCLICRLQALDLSALKPKLDKIGIELVGIGFDEEGLE 288636

Query: 80     EFLDGDYFAGELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVAAKAKAVG 133
              EF    +FAG++YLD+++ +Y+ L  KR + L+     L   V     + K +G
Sbjct: 288637 EFQQLKFFAGKIYLDKTRSVYRALNLKRRSKLTTYELFLDPRVMVYYRRIKEMG 288798


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.322    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,323,763
Number of Sequences: 6
Number of extensions: 37561
Number of successful extensions: 117
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 7
length of query: 198
length of database: 11,314,357
effective HSP length: 95
effective length of query: 103
effective length of database: 11,313,787
effective search space: 1165320061
effective search space used: 1165320061
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 101 (43.5 bits)