TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000026_1.0 # Protein # Selenoprotein U1 (SelU1) # Homo
sapiens # Complete  #RRPGX
         (229 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    68   5e-12

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4,
              whole genome shotgun sequence
          Length = 5450249

 Score = 68.2 bits (165), Expect = 5e-12
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 8/168 (4%)
 Frame = +1

Query: 69     LWEKNGAVIMAVRRPGXFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYF 128
              L+E    V+   RR G  +CR +A DLS+LK  LD++G+ L  +  +    E      +F
Sbjct: 288481 LYENKRIVVAIFRRFGCLICRLQALDLSALKPKLDKIGIELVGIGFDEEGLEEFQQLKFF 288660

Query: 129    KGEIFLDEKKKFY---GPQRRKMM--FMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGG 183
               G+I+LD+ +  Y     +RR  +  +  F+   V   + R    GFS N   +GF LG 
Sbjct: 288661 AGKIYLDKTRSVYRALNLKRRSKLTTYELFLDPRVMVYYRRIKEMGFSSNYRKDGFQLGA 288840

Query: 184    VFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKM---IKPQTLASEK 228
                V+G   Q    + R + + D  +L  + EA       K + LAS K
Sbjct: 288841 TMVLGPKPQEAHYDFRPQRYADIFDLKEIWEACLKPYPTKEEILASRK 288984


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.322    0.140    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,460,678
Number of Sequences: 6
Number of extensions: 109767
Number of successful extensions: 443
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 44
length of query: 229
length of database: 11,314,357
effective HSP length: 97
effective length of query: 132
effective length of database: 11,313,775
effective search space: 1493418300
effective search space used: 1493418300
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 102 (43.9 bits)