TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000062_1.0 # Protein # Selenoprotein U (SelU) #
Caenorhabditis elegans # Complete
         (219 letters)

Database: D.discoideum_AX4/genome.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromoso...    52   4e-07

>gi|93569080|gb|CM000153.2| Dictyostelium discoideum AX4 chromosome 4,
              whole genome shotgun sequence
          Length = 5450249

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
 Frame = +1

Query: 55     VERNEQFTADSLFKKGPIMVMAVRRPGXMLCRREAAELHTLLPLLKEKGIELAAVVHETR 114
              V   ++    SL++   I+V   RR G ++CR +A +L  L P L + GIEL  +  +  
Sbjct: 288448 VTDGKELLLTSLYENKRIVVAIFRRFGCLICRLQALDLSALKPKLDKIGIELVGIGFDEE 288627

Query: 115    GANEFKSW-FSGGDVYLDTDRTFYG----PNERWLPVWMGFLRFGTYSNVYKAKKAKVEG 169
              G  EF+   F  G +YLD  R+ Y          L  +  FL         + K+     
Sbjct: 288628 GLEEFQQLKFFAGKIYLDKTRSVYRALNLKRRSKLTTYELFLDPRVMVYYRRIKEMGFSS 288807

Query: 170    NMEGEGRLLGGVYLIA--NNDIVFTHLEKEWGDAADIKEVRAAVEK 213
              N   +G  LG   ++     +  +    + + D  D+KE+  A  K
Sbjct: 288808 NYRKDGFQLGATMVLGPKPQEAHYDFRPQRYADIFDLKEIWEACLK 288945


  Database: D.discoideum_AX4/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,620,878
Number of Sequences: 6
Number of extensions: 67098
Number of successful extensions: 192
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 14
length of query: 219
length of database: 11,314,357
effective HSP length: 97
effective length of query: 122
effective length of database: 11,313,775
effective search space: 1380280550
effective search space used: 1380280550
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 102 (43.9 bits)