T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=94
*
 BAD AVG GOOD
*
Sps2.Perkinsus_   :  94
PHYCAscaffold_4   :  94
cons              :  94

Sps2.Perkinsus_   VWDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNM
PHYCAscaffold_4   AFDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLANDLK

cons              .:*******. *****.**  ** ***:   :* .:* ::.:.  


Sps2.Perkinsus_   LTED-SPDCSMVPVGDGER-VLVSSTDFLSPISQDPFHQGWIAAA
PHYCAscaffold_4   PNETPGMDSSVVKISHGTDLYLVSTTDFFFPSVEDPYVQGKIACA

cons               .*  . *.*:* :..*    ***:***: *  :**: ** **.*


Sps2.Perkinsus_   NTLSDLYAVGADDINNILMILTVSMKMSPLEQTVTTKKMIEGFNA
PHYCAscaffold_4   NVLSDAYAMGVTEVDTMLMILGVCRDMSEKQRDVVTTQMIRGFND

cons              *.*** **:*. :::.:**** *. .**  :: *.*.:**.*** 


Sps2.Perkinsus_   CCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQLVTTDRAVPGN
PHYCAscaffold_4   LARQAHTNVTGGQTVMNPWPIVGGVAMSVRSESQIIRPENAVVGD

cons               ..:* *:*******:****::** **:.  :**:: .:.** *:


Sps2.Perkinsus_   VIVLTKPLGTQVTGNLALWMMNEAQWGKVVKAGLDVETCTRAVKM
PHYCAscaffold_4   VIILTKPLGTQVAVNLFQWKKKPERWQRV-ESIVTPEDADVAFQM

cons              **:*********: **  *  :  :* :* :: :  * .  *.:*


Sps2.Perkinsus_   GDLSMMTLNKNGCRLMREFGALGATDVTGFGLVGHADNLARVQKS
PHYCAscaffold_4   ASESMSRLNLNAAKMMHKYGAHSATDVTGFGIVAHARNQAKSQLG

cons              .. **  ** *..::*:::** .********:*.** * *: * .


Sps2.Perkinsus_   GASIEIDTVPTIQGCKTLSMVRPNGRDYGLLEGRAAETSGGLLVM
PHYCAscaffold_4   DVSFEIHTLPIIKNMAKVN--EAIGNSFKLLDGFAAETSGGLLLC

cons              ..*:**.*:* *:.  .:.  .. *..: **:* *********: 


Sps2.Perkinsus_   LRDKETAEKFIAALRAC
PHYCAscaffold_4   LP-AENADAYIKEL--R

cons              *   *.*: :*  *