TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                   226   1e-59

>TcIL3000_10_v2.embl
          Length = 3612457

 Score =  226 bits (576), Expect = 1e-59
 Identities = 127/333 (38%), Positives = 191/333 (57%), Gaps = 6/333 (1%)
 Frame = +1

Query: 2       WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDSPDCSMVPV--- 58
               ++P+ LGL  +F+LT ++  KG  CK+   +L + L ++       +   DCS+V +   
Sbjct: 2071891 FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPGQKDAGMDCSIVKLQHK 2072070

Query: 59      --GDGERVLVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMS 116
                    +  +VS+TDF  P  +DP+ QG I AAN LSDLY+ G    + +LM+L  S  M 
Sbjct: 2072071 DESGNQLYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMD 2072250

Query: 117     PLEQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATMLQSQLVTTDRAVP 176
                 E+ + T++M++GF      AG+ VTGGQTV NPWPL+GG AM+ + +SQ+V      P
Sbjct: 2072251 KTERDICTREMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAMSVVPESQMVRPTGLRP 2072430

Query: 177     GNVIVLTKPLGTQVTGNLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKNG 235
               G+++VLTKPLG Q+  NL  W+   +  +   ++  +D+E            M  LN+  
Sbjct: 2072431 GDILVLTKPLGCQIAVNLKQWIHRPSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREA 2072610

Query: 236     CRLMREFGALGATDVTGFGLVGHADNLARVQKSGASIEIDTVPTIQGCKTLSMVRPNGRD 295
                RLM    A GATDVTGFG++GHA NL   Q++   + ++++P  +G    S +  +   
Sbjct: 2072611 ARLMCVHKAHGATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRLMDD--K 2072784

Query: 296     YGLLEGRAAETSGGLLVMLRDKETAEKFIAALR 328
               + L EG +AETSGGLLV   D  TAE++I  LR
Sbjct: 2072785 FRLFEGYSAETSGGLLVAFEDVTTAERYIRDLR 2072883


  Database: T.congolense/genome.fa
    Posted date:  Nov 21, 2011  7:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,142,715
Number of Sequences: 11
Number of extensions: 108217
Number of successful extensions: 417
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 26
length of query: 330
length of database: 7,429,315
effective HSP length: 98
effective length of query: 232
effective length of database: 7,428,237
effective search space: 1723350984
effective search space used: 1723350984
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 103 (44.3 bits)