TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: P.capsici/genome.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_49                                                      234   1e-61

>PHYCAscaffold_49
          Length = 508508

 Score =  234 bits (597), Expect = 1e-61
 Identities = 149/372 (40%), Positives = 205/372 (55%), Gaps = 45/372 (12%)
 Frame = -3

Query: 2     WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDSP--DCSMVPVG 59
             +DPTSLGL  DFVLT+FS  KG GCK+   +L  +L  + + ++   ++P  D S+V + 
Sbjct: 85458 FDPTSLGLEADFVLTNFSALKGCGCKLPQAKLLGYLDDLAN-DLKPNETPGMDSSVVKIS 85282

Query: 60    DG-ERVLVSSTDFLSPISQDPFHQGWIAAANTLSDLYAVGADDINNILMILTVSMKMSPL 118
              G +  LVS+TDF  P  +DP+ QG IA AN LSD YA+G  +++ +LMIL V   MS  
Sbjct: 85281 HGTDLYLVSTTDFFFPSVEDPYVQGKIACANVLSDAYAMGVTEVDTMLMILGVCRDMSEK 85102

Query: 119   EQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGGCAMATM--------------- 163
             ++ V T +MI GFN    +A T VTGGQTV NPWP++GG AM+                 
Sbjct: 85101 QRDVVTTQMIRGFNDLARQAHTNVTGGQTVMNPWPIVGGVAMSVRSG**KLSIQHL*LI* 84922

Query: 164   ------LQSQLVTTDRAVPGNVIVLTKPLGTQVTGNLALWMMNEAQWGKVVKAGLDVETC 217
                    +SQ++  + AV G+VI+LTKPLGTQV  NL  W     +W + V++ +  E  
Sbjct: 84921 D*RVFPAESQIIRPENAVVGDVIILTKPLGTQVAVNLFQWKKKPERWQR-VESIVTPEDA 84745

Query: 218   TRAVKMGDLSMMTLNKNGCRLMRE---------------------FGALGATDVTGFGLV 256
               A +M   SM  LN N  ++M +                     +GA  ATDVTGFG+V
Sbjct: 84744 DVAFQMASESMSRLNLNAAKMMHKVR*VFCLLPFITY*LSLSLC*YGAHSATDVTGFGIV 84565

Query: 257   GHADNLARVQKSGASIEIDTVPTIQGCKTLSMVRPNGRDYGLLEGRAAETSGGLLVMLRD 316
              HA N A+ Q    S EI T+P I+    ++     G  + LL+G AAETSGGLL+ L  
Sbjct: 84564 AHARNQAKSQLGDVSFEIHTLPIIKNMAKVN--EAIGNSFKLLDGFAAETSGGLLLCL-P 84394

Query: 317   KETAEKFIAALR 328
              E A+ +I  LR
Sbjct: 84393 AENADAYIKELR 84358


  Database: P.capsici/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,494,076
Number of Sequences: 917
Number of extensions: 311364
Number of successful extensions: 1315
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 504
length of query: 330
length of database: 21,341,249
effective HSP length: 105
effective length of query: 225
effective length of database: 21,244,964
effective search space: 4780116900
effective search space used: 4780116900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)