TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sps2.Perkinsus_marinus located on
gi|126302146|gb|AAXJ01000359.1|:subseq(27302,5000) Perkinsus
marinus:[translate(1)] #elongated from blast
         (330 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_21                                                           191   2e-48

>scaffold_21
          Length = 951085

 Score =  191 bits (485), Expect = 2e-48
 Identities = 120/309 (38%), Positives = 169/309 (54%), Gaps = 22/309 (7%)
 Frame = -2

Query: 42     DGNML-TEDSP---DCSMVPVGDGERVLVSSTDFLSPISQDPFHQGWIAAANTLSDLYAV 97
              DGN L T D     DCS+     G  V +S+TDF  P+   P+ QG I AAN LSDLYA 
Sbjct: 153078 DGNNLGTADGRIALDCSIRETRQGHYV-ISTTDFFFPLVDSPYLQGRIGAANVLSDLYAE 152902

Query: 98     GADDINNILMILTVSMKMSPLEQTVTTKKMIEGFNACCEEAGTKVTGGQTVFNPWPLLGG 157
              G    + +LM+L  S+ M+P ++T+ T  M+ GF   C EA T +TGGQTV NPW ++GG
Sbjct: 152901 GVQHCDFVLMLLAASLDMTPQDRTICTNLMVRGFRDACTEAETTITGGQTVLNPWAIIGG 152722

Query: 158    CAMATMLQSQLVTTDRAVPGNVIVLTKPLGTQVTGNLALW------------MMNEAQWG 205
               A + + + + V++D A  G+VIVLTKP+GTQ+  N+  W               +  W 
Sbjct: 152721 VATSVVTRDEYVSSDGACVGDVIVLTKPIGTQIAVNVHEWRKRHEKKAKNGDTTGDKNWN 152542

Query: 206    KVVKAG------LDVETCTRAVKMGDLSMMTLNKNGCRLMREFGALGATDVTGFGLVGHA 259
              K+++        L V      +     SM  LN+ G +LM +  A   TDVTGFGL+GHA
Sbjct: 152541 KILEQNKNGDEFLTVSESEIMMHAAVRSMSKLNRFGSKLMTKHNAHAGTDVTGFGLLGHA 152362

Query: 260    DNLARVQKSGASIEIDTVPTIQGCKTLSMVRPNGRDYGLLEGRAAETSGGLLVMLRDKET 319
               NL   Q +   IE+ T P I    TL  +  N  ++ L +G +AETSGGL++ + + + 
Sbjct: 152361 QNLMDNQIAKVGIELHTFPCI--ANTLK-INDNIMNFRLRDGYSAETSGGLMISMTEAD- 152194

Query: 320    AEKFIAALR 328
              A  + A LR
Sbjct: 152193 AIAYCAELR 152167


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,298,291
Number of Sequences: 271
Number of extensions: 281484
Number of successful extensions: 1011
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 147
length of query: 330
length of database: 26,846,802
effective HSP length: 107
effective length of query: 223
effective length of database: 26,817,805
effective search space: 5980370515
effective search space used: 5980370515
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)