TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: L.tarentolae/genome.fa 
           7267 sequences; 31,598,840 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Lt_contig6185  |  | 1 to 5850                                         224   9e-59

>Lt_contig6185  |  | 1 to 5850
          Length = 5850

 Score =  224 bits (571), Expect = 9e-59
 Identities = 148/396 (37%), Positives = 201/396 (50%), Gaps = 15/396 (3%)
 Frame = -3

Query: 38   FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
            F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+              GQ++  
Sbjct: 5650 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLTLLQELSATP-----------GQKD-- 5510

Query: 98   QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 152
                               +G+D  ++PL+        L LV TTDFF+P V DP++ G+
Sbjct: 5509 -------------------VGVDCSIVPLQRTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 5387

Query: 153  IACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXX 212
            I  ANVLSDLY+MGI +CD                R   T  ++KGF +           
Sbjct: 5386 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERAHLATTTVTG 5207

Query: 213  XXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWL--DNP 269
                 NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL   +P
Sbjct: 5206 GQTVMNPWPLIGGVAMAVVSEAEMVRPTGLLRTGDILVLTKPLGCQVAVNLKQWLLRPSP 5027

Query: 270  ERWNKVKMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
               + +K  +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 5026 LYEDAIKGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 4847

Query: 330  AKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQA 383
               Q        +  V+  LP+     A SK  + ++ LL+G S ETSGGLL+  P   A
Sbjct: 4846 GAAQTMGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSPETSGGLLVAFPNTTA 4667

Query: 384  AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
            A  FC+E+  ++  +G  +WIVG VE  +R A  +D
Sbjct: 4666 AEAFCAEL--TEVDDGCPSWIVGHVE--DRAASSVD 4571


  Database: L.tarentolae/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 31,598,840
  Number of sequences in database:  7267
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,831,274
Number of Sequences: 7267
Number of extensions: 260136
Number of successful extensions: 1425
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 978
length of query: 448
length of database: 10,532,946
effective HSP length: 103
effective length of query: 345
effective length of database: 9,784,445
effective search space: 3375633525
effective search space used: 3375633525
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)