TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: L.donovani_BPK282A1/genome.fa 
           36 sequences; 32,444,998 total letters

Searching....................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig_36                                                             226   3e-59

>contig_36
          Length = 2713248

 Score =  226 bits (576), Expect = 3e-59
 Identities = 150/396 (37%), Positives = 198/396 (50%), Gaps = 15/396 (3%)
 Frame = -1

Query: 38      FEPQALGLSPSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEEAS 97
               F+P +LGL   ++LT ++ +KG  CK+PQ  LL LL  L+              GQ++  
Sbjct: 2120613 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQELSTTP-----------GQKD-- 2120473

Query: 98      QEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGG-----LSLVQTTDFFYPLVEDPYMMGR 152
                                  +GMD  ++PL H       L LV TTDFF+P V DP++ G+
Sbjct: 2120472 -------------------VGMDCSIVPLHHTNSKGEALFLVSTTDFFFPSVSDPFLQGQ 2120350

Query: 153     IACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTPLMVKGFRDXXXXXXXXXXX 212
               I  ANVLSDLY+MGI +CD                R   T  ++KGF +           
Sbjct: 2120349 IGAANVLSDLYSMGIPDCDTMLMLLAASTEMDEHERLITTREIMKGFAERARLATTTVTG 2120170

Query: 213     XXXXXNPWIIIGGVATVVCQPNEFIMPDSAV-VGDVLVLTKPLGTQVAVNAHQWLDNPER 271
                    NPW +IGGVA  V    E + P   +  GD+LVLTKPLG QVAVN  QWL  P  
Sbjct: 2120169 GQTVMNPWPLIGGVAMAVVSEAEMVRPAGLLCAGDILVLTKPLGCQVAVNLKQWLLRPSP 2119990

Query: 272     WNKVKMV--VSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNL 329
                 +  +   +S EE+E  Y  A  +M  LNR  A LM    AH ATD+TGFGILGH+ N 
Sbjct: 2119989 LYEEAIAGHISPEEIEELYNMATDSMRRLNREGARLMRKHGAHGATDVTGFGILGHANNF 2119810

Query: 330     AKQQR-----NEVSFVIHNLPIIAKMAAVSK-ASGRFGLLQGTSAETSGGLLICLPREQA 383
                  Q        +  V+  LP+     A SK  + ++ LL+G SAETSGGLL+  P   A
Sbjct: 2119809 GAAQTVGDAPRSLCLVLERLPMFKTAVAASKRMNDKYRLLEGYSAETSGGLLVAFPSTTA 2119630

Query: 384     AR-FCSEIKSSKYGEGHQAWIVGIVEKGNRTARIID 418
               A  FC+E+  +    G  +WIVG VE  +R A + D
Sbjct: 2119629 AEAFCAEL--TAIDGGCPSWIVGHVE--DRAANVAD 2119534


  Database: L.donovani_BPK282A1/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 32,444,998
  Number of sequences in database:  36
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,507,288
Number of Sequences: 36
Number of extensions: 281123
Number of successful extensions: 1697
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 164
length of query: 448
length of database: 10,814,999
effective HSP length: 104
effective length of query: 344
effective length of database: 10,811,255
effective search space: 3719071720
effective search space used: 3719071720
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)