TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: C.fasciculata/genome.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig765  |  | 1 to 162644                                        225   4e-59

>Cf_Contig765  |  | 1 to 162644
          Length = 162644

 Score =  225 bits (574), Expect = 4e-59
 Identities = 141/367 (38%), Positives = 194/367 (52%), Gaps = 14/367 (3%)
 Frame = +3

Query: 2      FKPESYGLSHDFRLTKFSTLRGXGSKVPQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGI 61
              F P S GL  +F+LT ++ L+G   K+PQ  L  LL  V     G KD           +
Sbjct: 101625 FDPVSLGLPAEFQLTDYTRLKGCSCKLPQPKLLALLQAV-ATSPGQKD-----------V 101768

Query: 62     GLDSSVIALKHD------LFLVQSVDFFYPLIDDPFMLGKIALANVVSDVFAVGATEIDQ 115
              G+D S++ L H       LFLV + DFF+P + DPF+ G I  ANV+SD++++G    D 
Sbjct: 101769 GMDCSIVPLHHTNGKGEALFLVSTTDFFFPSVADPFLQGHIGAANVLSDLYSMGIAHCDT 101948

Query: 116    IKLIVTAPTEFTEQEREVVVPMVMQGFLEAAKACNAPVQIGSIAENPWCVIGGAASAVCH 175
              + +++ A T+  E ER V    +M+GF E A+     V  G    NPW +IGG A AV  
Sbjct: 101949 MLMLLAASTDMDEDERLVTTREIMRGFAERARLAATSVTGGQTVMNPWPLIGGVAMAVVS 102128

Query: 176    RSELIMPYN-AQPGDALVLTKPLGTQLATNAYIWMGEQQSDSWAQLRERFTVADIEQTYR 234
               +E++ P    + GD LVLTKPLG Q+A N   W+          +    +  +IE+ Y 
Sbjct: 102129 EAEMVRPAGLLRAGDVLVLTKPLGCQIAMNLKQWLMRPSPLYEDVIEGHISRDEIEELYN 102308

Query: 235    IALESMSRLNKTGAELMKKYGAHAATDVTGFGLYGHAENLASHQTA-----DVDFHLDTL 289
               A +SM RLN+ GA LM K+GAH ATDVTGFG+ GHA N  + Q        +   LD L
Sbjct: 102309 KATDSMRRLNREGARLMLKHGAHGATDVTGFGILGHANNFGAAQAVGSAPQSLCLVLDRL 102488

Query: 290    PIIKNVREIAETLGRGAKLLAGKAVETSGGLLICL-PREAAAGFCEEYRRCTKH-EAWIV 347
              P++K     +  +    +L  G + ETSGGLL+ L  REAA  F +E         +WIV
Sbjct: 102489 PMLKTAVAASRLMQDKYRLFEGYSAETSGGLLVALASREAAEAFQKELEEADGGCPSWIV 102668

Query: 348    GHVEKGA 354
              G VE  A
Sbjct: 102669 GRVEARA 102689


  Database: C.fasciculata/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,906,484
Number of Sequences: 1089
Number of extensions: 231875
Number of successful extensions: 1444
Number of sequences better than 1.0e-04: 1
Number of HSP's better than  0.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1173
Number of HSP's gapped (non-prelim): 592
length of query: 369
length of database: 12,349,441
effective HSP length: 103
effective length of query: 266
effective length of database: 12,237,274
effective search space: 3255114884
effective search space used: 3255114884
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 105 (45.1 bits)