genewise output
Score 238.18 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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Sps2.Perkinsus_    2 WDPTSLGLSKDFVLTSFSERKGXGCKVQPDQLSSFLPQIGDGNMLTEDS 
                     ++P+ LGL  +F+LT ++  KG  CK+   +L ++L ++       +   
                     FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPGQKDAG 
TcIL3000_10_v2.20000 tgctccgtcggtacagtgccagtataccccgccgcccagtgacgcaggg 
                     taccatgtcaatttcaacgtaggggatcacattcttagtccccgaaacg 
                     tgaggccggtgttatccggcgatccgaagtataataaattcgatagtac 


Sps2.Perkinsus_   51 PDCSMVPV-----GDGERVLVSSTDFLSPISQDPFHQGWIAAANTLSDL 
                      DCS+V +        +  +VS+TDF  P  +DP+ QG I AAN LSDL 
                     MDCSIVKLQHKDESGNQLYMVSTTDFFFPSVEDPYLQGQIGAANVLSDL 
TcIL3000_10_v2.20147 agtaagacccaggtgacctagtaagtttcagggcttcgcagggagttgc 
                     taggttataaaaacgaatattcccatttcgtaacatagatgccattcat 
                     gcctcgagacgcgcgcgtcgagatctttttgacacagaaatagctagtc 


Sps2.Perkinsus_   95 YAVGADDINNILMILTVSMKMSPLEQTVTTKKMIEGFNACCEEAGTKVT 
                     Y+ G    + +LM+L  S  M   E+ + T++M++GF      AG+ VT 
                     YSTGIYRCDTVLMLLAASTDMDKTERDICTREMMKGFVDHVRLAGSDVT 
TcIL3000_10_v2.20294 taagatctgagtaccggaagagaagcgatacgaaagtggcgccggtgga 
                     agcgtaggactttttccgcataacagatgcgattagttaatgtcgcatc 
                     ctggttattccgggtggcctgtgtatcacatagggatgttcgtgggtag 


Sps2.Perkinsus_  144 GGQTVFNPWPLLGGCAMATMLQSQLVTTDRAVPGNVIVLTKPLGTQVTG 
                     GGQTV+NPWPL+GG AM+ + +SQ+V      PG+++VLTKPLG Q+   
                     GGQTVMNPWPLIGGIAMSVVPESQMVRPTGLRPGDILVLTKPLGCQIAV 
TcIL3000_10_v2.20441 ggcagaactccaggagaaggcgtcagacagcccggacgtaaccgtcagg 
                     ggacttacgcttggtctgttcacattgccgtgcgattttcactggatct 
                     ttagagcggattgtaggttccgtagtgtctcctatttggggccatgctg 


Sps2.Perkinsus_  193 NLALWMMNEAQ-WGKVVKAGLDVETCTRAVKMGDLSMMTLNKNGCRLMR 
                     NL  W+   +  +   ++  +D+E            M  LN+   RLM  
                     NLKQWIHRPSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREAARLMC 
TcIL3000_10_v2.20588 acactacactcatgaaacgaagcggaggcttgggggaaccacgggacat 
                     ataagtagccctaaggtagatataataatagcccagtagtagaccgttg 
                     ccgggacactcctgtatatagttagctagtttccgtggttctggaaggc 


Sps2.Perkinsus_  241 EFGALGATDVTGFGLVGHADNLARVQKSGASIEIDTVPTIQGCKTLSMV 
                        A GATDVTGFG++GHA NL   Q++   + ++++P  +G    S + 
                     VHKAHGATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRL 
TcIL3000_10_v2.20735 gcagcggaggagtgaagcgaacgggcggattcgcattcatagggagtac 
                     taacagccatcgtgttgaccatggcaacatgtttactctaagctaccgt 
                     gtgttaatcgatcctcgtcatttaaggcaaccgctgaggtagggggggg 


Sps2.Perkinsus_  290 RPNGRDYGLLEGRAAETSGGLLVMLRDKETAEKFIAALR           
                       +   + L EG +AETSGGLLV   D  TAE++I  LR           
                     MDD--KFRLFEGYSAETSGGLLVAFEDVTTAERYIRDLR           
TcIL3000_10_v2.20882 agg  atcctggttggaaggccggtgggaaggctacgcc           
                     taa  atgttagaccacgggtttctaatcccagatgatg           
                     gcc  atgttggcccggtgtcccttgttagagccttcct           


//
>TcIL3000_10_v2.embl:subseq(2051891,50000).pep
FEPSQLGLPDEFILTDYARLKGCSCKLPQPELLALLQRVSATPGQKDAGMDCSIVKLQHK
DESGNQLYMVSTTDFFFPSVEDPYLQGQIGAANVLSDLYSTGIYRCDTVLMLLAASTDMD
KTERDICTREMMKGFVDHVRLAGSDVTGGQTVMNPWPLIGGIAMSVVPESQMVRPTGLRP
GDILVLTKPLGCQIAVNLKQWIHRPSPIYESRIQGKMDLEEIDELYCAAAEGMKRLNREA
ARLMCVHKAHGATDVTGFGIIGHATNLGGAQEAKLCLVLNSLPMYKGAVKASRLMDDKFR
LFEGYSAETSGGLLVAFEDVTTAERYIRDLR
//
>TcIL3000_10_v2.embl:subseq(2051891,50000).[20000:20992].sp
TTTGAGCCATCGCAGCTCGGCTTGCCGGATGAGTTTATTCTAACTGACTACGCGCGGCTC
AAGGGATGTAGCTGCAAGCTACCACAGCCTGAACTTCTAGCACTTCTACAAAGAGTTTCT
GCCACGCCAGGTCAAAAGGATGCAGGCATGGACTGCAGTATCGTGAAACTGCAACACAAG
GACGAGTCCGGGAACCAGCTTTACATGGTATCGACAACTGACTTTTTTTTTCCTAGTGTG
GAAGACCCATACTTACAGGGACAAATAGGTGCAGCGAACGTTTTATCGGATCTCTACAGT
ACGGGGATTTATCGATGTGATACCGTCTTGATGCTGCTTGCGGCGAGCACCGATATGGAT
AAGACTGAACGTGACATATGCACACGTGAAATGATGAAGGGATTTGTGGATCATGTCCGG
CTTGCGGGGTCGGATGTAACGGGTGGTCAAACGGTAATGAACCCGTGGCCACTTATTGGG
GGTATAGCGATGAGTGTTGTCCCCGAGTCTCAAATGGTTAGGCCTACCGGTCTCCGCCCT
GGAGATATTCTTGTGTTGACGAAGCCCCTCGGATGTCAGATCGCTGTGAACCTCAAGCAG
TGGATACACAGACCCTCTCCCATCTATGAGAGTAGAATTCAAGGTAAAATGGATCTTGAA
GAGATCGATGAACTGTATTGTGCTGCCGCCGAGGGTATGAAGCGTCTTAACCGTGAGGCG
GCAAGACTGATGTGCGTGCATAAGGCTCATGGAGCAACTGACGTGACAGGTTTCGGCATT
ATCGGGCATGCCACAAATCTTGGTGGAGCACAGGAGGCCAAATTATGCCTCGTGCTCAAT
TCGTTACCGATGTATAAAGGGGCGGTGAAGGCGTCGAGGCTGATGGACGACAAATTTCGG
CTTTTTGAGGGGTACTCCGCCGAGACGAGTGGGGGTCTCCTCGTCGCTTTTGAGGATGTT
ACAACGGCAGAGCGCTACATTCGTGACCTCCGT
//
TcIL3000_10_v2.embl:subseq(2051891,50000)	GeneWise	match	20000	20992	243.17	+	.	TcIL3000_10_v2.embl:subseq(2051891,50000)-genewise-prediction-1
TcIL3000_10_v2.embl:subseq(2051891,50000)	GeneWise	cds	20000	20992	0.00	+	0	TcIL3000_10_v2.embl:subseq(2051891,50000)-genewise-prediction-1
//